YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7469381
Organism:	Synechocystis sp.
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7469381.

Description	E-value	Query Range	Subject Range
gi\|17133602, gi\|... - gi\|17231958\|ref\|NP_488506.1\| Ap4A phosphorylase II [Nostoc sp. PCC 7120], gi\|17133602\|dbj\|BAB76165.1... gi\|25530194 - pir\|\|AB2364 Ap4A phosphorylase II [imported] - Nostoc sp. (strain PCC 7120)	405.0	[0..15]	[301..1]
gi\|75703260, gi\|... - gi\|75909535\|ref\|YP_323831.1\| Ap4A phosphorylase II [Anabaena variabilis ATCC 29413], gi\|75703260\|gb\|...	399.0	[0..15]	[301..1]
gi\|53687949 - gi\|53687949\|ref\|ZP_00345508.1\| COG4360: ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phos...	381.0	[0..15]	[301..1]
gi\|67854047, gi\|... - gi\|67924122\|ref\|ZP_00517568.1\| similar to ATP adenylyltransferase (5' 5'''-P-1 P-4-tetraphosphate ph...	370.0	[0..20]	[299..5]
gi\|48891692, gi\|... - gi\|71678064\|ref\|ZP_00675794.1\| similar to ATP adenylyltransferase (5' 5'''-P-1 P-4-tetraphosphate ph...	366.0	[0..19]	[299..1]
gi\|33634921, gi\|... - gi\|33863004\|ref\|NP_894564.1\| putative ATP adenylyltransferase [Prochlorococcus marinus str. MIT 9313...	315.0	[0..30]	[298..7]
gi\|33632937, gi\|... - gi\|33865767\|ref\|NP_897326.1\| ATP adenylyltransferase [Synechococcus sp. WH 8102], gi\|33632937\|emb\|CA...	308.0	[0..29]	[298..6]
gi\|90411819, gi\|... - gi\|90411819\|ref\|ZP_01219828.1\| hypothetical Ap4A phosphorylase II [Photobacterium profundum 3TCK], g...	307.0	[0..30]	[297..3]
gi\|46913056, gi\|... - gi\|54308627\|ref\|YP_129647.1\| Ap4A phosphorylase II [Photobacterium profundum SS9], gi\|46913056\|emb\|C...	306.0	[0..30]	[297..3]
gi\|33240411, gi\|... - gi\|33240411\|ref\|NP_875353.1\| putative ATP adenylyltransferase [Prochlorococcus marinus subsp. marinu...	304.0	[0..28]	[298..5]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNVVARCQE RSYLFALTMA ESYLLPGQLW PRLLAQSDHA LKTGALQPIT TAVTTLEVGE  60
   61 INFVVRILTQ IHRKKIITEH Q

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRQKINPFLP YDADLFVGHF SPTHLGLLNK FKVVDQHLLI VTREFEDQQS PLTLGDFGVA  60
   61 VQVLEEKEGL VFYNSGPKAG ASQPHRHLQW IPFPLVENGQ KFPLADHFIQ AKNLPFKTAI 120
  121 APLTMDVIND ADGGKICYQI YQDLLQQLGL QT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.88
Match:	1fhiA
Description:	SUBSTRATE ANALOG (IB2) COMPLEX WITH THE FRAGILE HISTIDINE TRIAD PROTEIN, FHIT
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [234-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGGAKPHPYN LLMTREFLAI VPRSQESYQD IEVNALGFAG GLLVRNQQQL ELLQQLGPWQ  60
   61 LLQKVGIAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.673	N/A	N/A	a.189.1	Description not found.
View	Download	0.634	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.620	N/A	N/A	a.189.1	Description not found.
View	Download	0.506	N/A	N/A	a.64.2	Bacteriocin AS-48
View	Download	0.462	N/A	N/A	a.57.1	Protein HNS-dependent expression A; HdeA
View	Download	0.462	N/A	N/A	a.57.1	Protein HNS-dependent expression A; HdeA
View	Download	0.431	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.425	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.333	N/A	N/A	a.64.2	Bacteriocin AS-48

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits