YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16330901, gi\|...
Organism:	Synechocystis sp. PCC 6803
Length:	519 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16330901, gi|....

Description	E-value	Query Range	Subject Range
GATB_THEEB - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Thermosynechococcus elongatus (strain ... GATB_SYNEL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Synechococcus elongatus GN=gatB PE=3 S...	737.0	[0..18]	[517..2]
GATB_SYNY3 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Synechocystis sp. (strain ATCC 27184 /... GATB_SYNY3 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Synechocystis sp. (strain PCC 6803 / K...	737.0	[0..25]	[519..1]
gi\|88925125, gi\|... - gi\|88945252\|ref\|ZP_01148466.1\| Glutamyl-tRNA(Gln) amidotransferase B subunit [Desulfotomaculum reduc...	732.0	[0..30]	[516..1]
GATB_GEOMG - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter metallireducens (strain GS-1...	732.0	[0..32]	[517..1]
GATB_GEOUR - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter uraniireducens (strain Rf4) ...	730.0	[0..32]	[517..1]
GATB_CARHZ - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Carboxydothermus hydrogenoformans (str...	730.0	[0..31]	[518..1]
gi\|98660243 - gi\|98660243\|dbj\|GAA02418.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	728.0	[0..30]	[516..16]
GATB_GEOSL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter sulfurreducens GN=gatB PE=3 ... GATB_GEOSL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter sulfurreducens (strain ATCC ...	728.0	[0..32]	[517..1]
GATB_GEODF - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter daltonii (strain DSM 22248 /...	728.0	[0..32]	[517..1]
gi\|67854463, gi\|... - gi\|67923708\|ref\|ZP_00517175.1\| Glutamyl-tRNA(Gln) amidotransferase B subunit [Crocosphaera watsonii ...	725.0	[0..26]	[517..3]

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Predicted Domain #1

Region A:
Residues: [1-519]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREKSARWTA GVWQNGRKPI CRKFMTATAV KTDYEAIIGL ETHCQLNTAS KIFCNCSTDF  60
   61 DSPPNTNVCP VCLGYPGVLP VLNEEVLAAA VKLGLAINGQ IAPYSKFDRK QYFYPDLPKN 120
  121 YQISQFDLPI VEHGSLEIEL VDKKTKEITR KTIGITRLHM EEDAGKLVHA GSDRLAGSTH 180
  181 SLVDFNRTGV PLLEIVSEPD LRTGQEAAEY AQSLRQLVRY LGISDGNMQE GSLRCDVNIS 240
  241 VRPVGQKEFG TKVEIKNMNS FSAIQKAIEY EIERQIKAIA DGEEIYQETR LWEEGSQRTI 300
  301 SMRKKEGSSD YRYFPEPDLP PLEVSEQQKQ TWFATLPELP SAKRARYEQK LGLSAYDARV 360
  361 LTEDRDVALY FEEAVNAGAD PKAVANWVTQ DIAAYLNNNR LTISGLALKP SALAELIDLI 420
  421 TKGTISGKIA KDILPELLEK GGSPQKIIEA RGLVQISDPD ELTAIIQAVI ADHPKELEKF 480
  481 RSGKGNMQGF FVGQVMKRTG GKADPKLTNQ LIGKLLAQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2df4B
Description:	No description for 2df4B was found.

Predicted functions:

Term	Confidence	Notes
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.94703732461209	bayes_pls_golite062009
ligase activity	5.28014676041088	bayes_pls_golite062009
catalytic activity	1.08973967683802	bayes_pls_golite062009
binding	1.0468360119595	bayes_pls_golite062009
ammonia ligase activity	0.978763138251862	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.789800177023595	bayes_pls_golite062009
acid-ammonia (or amide) ligase activity	0.632807059205458	bayes_pls_golite062009
nucleic acid binding	0.545649763280687	bayes_pls_golite062009
protein binding	0.440356087696859	bayes_pls_golite062009
kinase activity	0.21984983699175	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.132389278472779	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: