YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7429280
Organism:	Synechocystis sp.
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7429280.

Description	E-value	Query Range	Subject Range
gi\|75908017, gi\|... - gi\|75908017\|ref\|YP_322313.1\| methionine sulfoxide reductase B [Anabaena variabilis ATCC 29413], gi\|7...	265.0	[0..1]	[176..1]
gi\|23125872 - gi\|23125872\|ref\|ZP_00107789.1\| COG0229: Conserved domain frequently associated with peptide methioni...	263.0	[0..1]	[176..1]
gi\|77964334, gi\|... - gi\|78059784\|ref\|YP_366359.1\| methionine sulfoxide reductase B [Burkholderia sp. 383], gi\|77964334\|gb...	261.0	[0..3]	[176..4]
gi\|17231393, gi\|... - gi\|17231393\|ref\|NP_487941.1\| methionine sulfoxide reductase B [Nostoc sp. PCC 7120], gi\|17133035\|dbj... gi\|25302990 - pir\|\|AF2293 hypothetical protein alr3901 [imported] - Nostoc sp. (strain PCC 7120)	261.0	[0..1]	[176..1]
gi\|13474036, gi\|... - gi\|14024788\|dbj\|BAB51390.1\| transcription regulator [Mesorhizobium loti MAFF303099], gi\|13474036\|ref...	255.0	[0..1]	[176..1]
gi\|146408992, gi... - gi\|78699097\|ref\|ZP_00863595.1\| Methionine sulfoxide reductase B [Bradyrhizobium sp. BTAi1], gi\|78512...	247.0	[0..1]	[176..1]
MSRB_THEEB - Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB P... MSRB_SYNEL - Peptide methionine sulfoxide reductase msrB OS=Synechococcus elongatus GN=msrB PE=3 SV=1	245.0	[0..48]	[175..1]
gi\|86558601, gi\|... - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g... gi\|86610059 - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B...	244.0	[0..1]	[176..5]
gi\|27380966, gi\|... - gi\|27380966\|ref\|NP_772495.1\| methionine sulfoxide reductase B [Bradyrhizobium japonicum USDA 110], g...	244.0	[0..2]	[176..11]
MSRB_HAHCH - Peptide methionine sulfoxide reductase MsrB OS=Hahella chejuensis (strain KCTC 2396) GN=msrB PE=3 SV...	242.0	[0..48]	[176..1]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRYLLEVG TASLGAFWLA QYVNSTNQSQ PQLKSELEPQ IMPKTNEVFE VTKTDAEWQQ  60
   61 QLSPEAYKVL RKHGTERAGT SPLDKNYDLG TYECAGCELP LFSSETKFNS GTGWPSFYAP 120
  121 LENAVAYTVD KSFFMTRTEV HCARCGGHLG HVFDDGPQPT GKRYCMNGVS LKFVGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1xm0A
Description:	Solution NMR Structure of Methionine Sulfoxide Reductase B Using Minimal Constraint Strategy; Northeast Structural Genomics Target SR10
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-methionine-R-oxide reductase activity	6.23848614648911	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	5.90194589149201	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	3.4377744251418	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	1.80676476343543	bayes_pls_golite062009
binding	1.67290562818139	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
nucleic acid binding	0.555078494441175	bayes_pls_golite062009
ion binding	0.415760364192452	bayes_pls_golite062009
cation binding	0.404651661251597	bayes_pls_golite062009
metal ion binding	0.404651661251597	bayes_pls_golite062009
DNA binding	0.215568693193579	bayes_pls_golite062009
transcription regulator activity	0.183261590647643	bayes_pls_golite062009
protein binding	0.0755837372617499	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: