YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16329385, gi\|...
Organism:	Synechocystis sp. PCC 6803
Length:	507 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16329385, gi|....

Description	E-value	Query Range	Subject Range
gi\|15292465 - gi\|15292465\|gb\|AAK93501.1\| SD03168p [Drosophila melanogaster]	338.0	[0..19]	[501..243]
AGAP005020-PA - \|protein_coding\|2L:8329992:8344698:-1\|gene:AGAP005020 gi\|58386891, gi\|... - gi\|58386891\|ref\|XP_315127.2\| AGAP005020-PA [Anopheles gambiae str. PEST], gi\|55239719\|gb\|EAA10341.3\|...	337.0	[0..21]	[501..249]
gi\|54636171, gi\|... - gi\|54636171\|gb\|EAL25574.1\| GA15676 [Drosophila pseudoobscura pseudoobscura], gi\|125809133\|ref\|XP_001... gi\|125809133\|ref... - GA15676-PA [Drosophila pseudoobscura], GA15676 [Drosophila pseudoobscura pseudoobscura]	335.0	[0..19]	[501..243]
gi\|157749721 - gi\|157749721\|ref\|XP_001678574.1\| Hypothetical protein CBG00733 [Caenorhabditis briggsae AF16] gi\|187038836, gi... - gi\|39587255\|emb\|CAE57723.1\| Hypothetical protein CBG00733 [Caenorhabditis briggsae], gi\|187038836\|em...	324.0	[0..44]	[501..186]
gi\|108876781, gi... - gi\|157115737\|ref\|XP_001658285.1\| hypothetical protein AaeL_AAEL007316 [Aedes aegypti], gi\|108876781\|...	321.0	[0..21]	[501..243]
ltd-1 - LIM domain status:Confirmed UniProt:Q09577 protein_id:CAA87787.2	318.0	[0..44]	[501..186]
gi\|28950370 - gi\|28950370\|emb\|CAD71025.1\| related to SH3-domain protein Cyk3 [Neurospora crassa]	301.0	[0..36]	[454..689]
gi\|85099857 - gi\|85099857\|ref\|XP_960857.1\| hypothetical protein NCU04095 [Neurospora crassa OR74A] gi\|32405644, gi\|... - gi\|32405644\|ref\|XP_323435.1\| hypothetical protein [Neurospora crassa], gi\|28922386\|gb\|EAA31621.1\| pr...	300.0	[0..36]	[454..825]
gi\|91086661 - gi\|91086661\|ref\|XP_966862.1\| PREDICTED: similar to CG30147-PA, isoform A isoform 1 [Tribolium castan...	293.0	[0..21]	[501..251]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPSSLSALR FFLGFVNFNF SALINAHYTV SSYRPQPRST RRRMTKKSPK ANGGFFPALM  60
   61 LVGLIGAGIW YFSPSGGSKN LPPVNLGAIA DNLPQGINPK TLVVTQRVDN PIAGNTKSFS 120
  121 VDGGERLDNL ARTINYQGTS VKELADLIRP LASNDWEEAR LAYSWITQNI AYDVPMAETR 180
  181 NIDDLRPETV LAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	1x3wA
Description:	Structure of a peptide:N-glycanase-Rad23 complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [194-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GETICSGYSN LYQALAKELG LDVVIIEGFA KGGDVIVGDD PDVNHAWNGV KIDGQWYLLD  60
   61 TTWGAGIVSD GKFEAKFNPT YFATAPEQLI VSHFPRESQW QLLPQPYDRQ TFDQLPALTP 120
  121 RFFRDQIALV SHPKNDIVAG GDLEVILRTG NDVQVVAQLM DNNGQPLDKQ YTLSQSQQSQ 180
  181 VTVNAAFPQP GEYQLLILSK NSQEDTYYQA IAYDVKAQGA GQAFPSTYGT FSEKQVRLIS 240
  241 PLGRNLPQNQ ASYFQLQVPG AEKVVLVDEQ RQELIPLDRT GDVFTGSEII RFDNVTVAAQ 300
  301 FPGSNQFWSL LEYE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1kv3A
Description:	Transglutaminase N-terminal domain; Transglutaminase, two C-terminal domains; Transglutaminase catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.529663942126259	bayes_pls_golite062009
hydrolase activity	0.16837900182603	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: