YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25288830
Organism:	Caulobacter vibrioides
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25288830.

Description	E-value	Query Range	Subject Range
gi\|167350239, gi... - gi\|167647809\|ref\|YP_001685472.1\| 3-oxoacid CoA-transferase, B subunit [Caulobacter sp. K31], gi\|1673...	263.0	[0..1]	[215..1]
gi\|66781233, gi\|... - gi\|94984916\|ref\|YP_604280.1\| 3-oxoacid CoA-transferase, subunit B [Deinococcus geothermalis DSM 1130...	256.0	[0..1]	[211..1]
gi\|84690719, gi\|... - gi\|84701473\|ref\|ZP_01016048.1\| 3-oxoadipate CoA-transferase, beta subunit [Parvularcula bermudensis ...	255.0	[0..1]	[209..1]
gi\|15807735, gi\|... - gi\|6460542\|gb\|AAF12248.1\|AE001862_74 CoA transferase, subunit B [Deinococcus radiodurans R1], gi\|158... gi\|7471251 - pir\|\|E75600 butyrate-acetoacetate CoA-transferase (EC 2.8.3.9) large chain homolog DRA0067 [similari...	254.0	[0..1]	[210..1]
gi\|115379577, gi... - gi\|115379577\|ref\|ZP_01466665.1\| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B [Stigmatell...	253.0	[0..1]	[213..1]
gi\|108756835, gi... - gi\|108756835\|ref\|YP_631971.1\| 3-oxoacid CoA-transferase subunit B [Myxococcus xanthus DK 1622], gi\|1...	250.0	[0..1]	[213..1]
gi\|67153672 - gi\|67153672\|ref\|ZP_00415417.1\| 3-oxoacid CoA-transferase [Azotobacter vinelandii AvOP] gi\|67153672, gi\|... - gi\|67153672\|ref\|ZP_00415417.1\| 3-oxoacid CoA-transferase [Azotobacter vinelandii AvOP], gi\|67087805\|...	250.0	[0..1]	[210..1]
gi\|83853110, gi\|... - gi\|83858287\|ref\|ZP_00951809.1\| 3-oxoadipate CoA-transferase, beta subunit [Oceanicaulis alexandrii H...	250.0	[0..1]	[212..1]
gi\|91784432, gi\|... - gi\|91784432\|ref\|YP_559638.1\| butyryl-CoA:acetate CoA transferase [Burkholderia xenovorans LB400], gi...	249.0	[0..1]	[215..1]
gi\|109077090, gi... - gi\|109077090\|ref\|XP_001087834.1\| PREDICTED: 3-oxoacid CoA transferase 1 isoform 2 [Macaca mulatta], ...	249.0	[0..3]	[213..300]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWTRDEMAA RAARELKNGF YVNLGIGIPT LVANHIPEGV HVTLQSENGM LGMGPFPYED  60
   61 EADPDLINAG KQTITKLPTS SFFDSAQSFA MIRGGHIDLT VLGAMEVAQN GDIANWTIPG 120
  121 KMVKGMGGAM DLVAGVKRVI VVMDHANKAG QSKVLKRCAL PLTGAACVDM VITDLCVFDL 180
  181 DRKGGGLTLI ELAPEVTLDE VKAKTAADFD AGAFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.522879
Match:	1m3eA
Description:	Succinate:CoA transferase, N-terminal domain; Succinate:CoA transferase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-oxoacid CoA-transferase activity	2.22792536321983	bayes_pls_golite062009
catalytic activity	1.68776709414398	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.53789410984028	bayes_pls_golite062009
CoA-transferase activity	0.50782945985068	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.26901752706112	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	0.18413827683017	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: