YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|14973111, gi\|...
Organism:	Streptococcus pneumoniae TIGR4
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14973111, gi|....

Description	E-value	Query Range	Subject Range
gi\|39980854 - gi\|39980854\|ref\|NP_460910.2\| transposase for IS200 [Salmonella typhimurium LT2] gi\|205343070, gi... - gi\|205360131\|ref\|ZP_03224523.1\| transposase [Salmonella enterica subsp. enterica serovar Weltevreden... lcl\|NC_016856.1_... - [gene=tnpA_7] [protein=transposase for IS200] [protein_id=YP_005237924.1] [location=complement(20571...	217.0	[0..4]	[153..20]
gi\|229896537, gi... - gi\|229896537\|ref\|ZP_04511705.1\| transposase [Yersinia pestis Pestoides A], gi\|229896171\|ref\|ZP_04511... gi\|229697470, gi... - gi\|229897434\|ref\|ZP_04512590.1\| transposase [Yersinia pestis biovar Orientalis str. PEXU2], gi\|22984... gi\|229843066, gi... - gi\|229900060\|ref\|ZP_04515197.1\| transposase [Yersinia pestis biovar Orientalis str. India 195], gi\|2... gi\|229901197, gi... - gi\|229904555\|ref\|ZP_04519666.1\| transposase [Yersinia pestis Nepal516], gi\|229903915\|ref\|ZP_04519028... gi\|167420678, gi... - gi\|167422949\|ref\|ZP_02314702.1\| IS1541, transposase [Yersinia pestis biovar Orientalis str. MG05-102... gi\|167423625, gi... - gi\|167426978\|ref\|ZP_02318731.1\| IS1541, transposase [Yersinia pestis biovar Mediaevalis str. K197300... gi\|22127470, gi\|... - gi\|22127857\|ref\|NP_671280.1\| transposase [Yersinia pestis KIM], gi\|22127569\|ref\|NP_670992.1\| transpo... gi\|165937484, gi... - gi\|165940354\|ref\|ZP_02228873.1\| IS1541, transposase [Yersinia pestis biovar Orientalis str. IP275], ... gi\|45435450, gi\|... - gi\|45443553\|ref\|NP_995092.1\| transposase for the IS1541 insertion element [Yersinia pestis biovar Mi... gi\|166011680, gi... - gi\|166012262\|ref\|ZP_02233160.1\| IS1541, transposase [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|166212945, gi... - gi\|166214396\|ref\|ZP_02240431.1\| IS1541, transposase [Yersinia pestis biovar Antiqua str. B42003004],... gi\|152961618, gi... - gi\|153950386\|ref\|YP_001400650.1\| IS1541, transposase [Yersinia pseudotuberculosis IP 31758], gi\|1539... gi\|167051670, gi... - gi\|167402375\|ref\|ZP_02307840.1\| IS1541, transposase [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|162420779, gi... - gi\|162421874\|ref\|YP_001604752.1\| IS1541, transposase [Yersinia pestis Angola], gi\|162421858\|ref\|YP_0... gi\|52538019, gi\|... - gi\|52788090\|ref\|YP_093918.1\| putative transposase [Yersinia pestis], gi\|52538019\|emb\|CAG27444.1\| put... gi\|165919811, gi... - gi\|165928553\|ref\|ZP_02224385.1\| IS1541, transposase [Yersinia pestis biovar Orientalis str. F1991016...	216.0	[0..3]	[153..19]
gi\|26248994, gi\|... - gi\|26248994\|ref\|NP_755034.1\| hypothetical protein c3152 [Escherichia coli CFT073], gi\|26248470\|ref\|N... gi\|218706631, gi... - gi\|218707308\|ref\|YP_002414827.1\| transposase IS605 family, IS200 group [Escherichia coli UMN026], gi... gi\|170767762, gi... - gi\|170769996\|ref\|ZP_02904449.1\| transposase [Escherichia albertii TW07627], gi\|170769754\|ref\|ZP_0290...	216.0	[0..4]	[153..20]
gi\|27315476, gi\|... - gi\|27467931\|ref\|NP_764568.1\| IS605/IS200-like transposase [Staphylococcus epidermidis ATCC 12228], g...	215.0	[0..1]	[157..40]
T200_SALTI - Transposase for insertion sequence element IS200 OS=Salmonella typhi GN=tnpA1 PE=3 SV=1 T200_SALTY - Transposase for insertion sequence element IS200 OS=Salmonella typhimurium GN=tnpA1 PE=3 SV=1 T200_SALTY - Transposase for insertion sequence element IS200 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ... gi\|56130456, gi\|... - gi\|56416199\|ref\|YP_153274.1\| transposase for insertion sequence element IS200 [Salmonella enterica s... T200_SALTI - Transposase for insertion sequence element IS200 OS=Salmonella typhi GN=tnpA1 PE=3 SV=1 gi\|16761882, gi\|... - gi\|16763226\|ref\|NP_458843.1\| transposase for insertion sequence element is200 [Salmonella enterica s... gi\|29143261, gi\|... - gi\|29144705\|ref\|NP_808047.1\| transposase for insertion sequence element is200 [Salmonella enterica s... lcl\|NC_016856.1_... - [gene=tnpA_1] [protein=transposase] [protein_id=YP_005235713.1] [location=80499..80957], [gene=tnpA_... T200_SALTY - Transposase for insertion sequence element IS200 OS=Salmonella typhimurium GN=tnpA1 PE=3 SV=1 gi\|197365122, gi... - gi\|197365122\|ref\|YP_002144759.1\| transposase for insertion sequence element IS200 [Salmonella enteri... gi\|213163781 - gi\|213163781\|ref\|ZP_03349491.1\| transposase for IS200 [Salmonella enterica subsp. enterica serovar T... gi\|213424014 - gi\|213424014\|ref\|ZP_03356994.1\| transposase for IS200 [Salmonella enterica subsp. enterica serovar T... gi\|161366944, gi... - gi\|161617580\|ref\|YP_001591545.1\| hypothetical protein SPAB_05439 [Salmonella enterica subsp. enteric... gi\|205327589, gi... - gi\|205331053\|gb\|EDZ17817.1\| transposase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- st... gi\|205338466, gi... - gi\|205340350\|gb\|EDZ27114.1\| transposase [Salmonella enterica subsp. enterica serovar Heidelberg str.... gi\|194450158, gi... - gi\|194451407\|ref\|YP_002044940.1\| transposase for [Salmonella enterica subsp. enterica serovar Heidel...	215.0	[0..4]	[153..3]
gi\|8131738 - gi\|8131738\|gb\|AAF73101.1\|AF125554_2 putative transposase [Enterococcus faecium]	215.0	[0..3]	[156..1]
gi\|56414979, gi\|... - gi\|56415441\|ref\|YP_152516.1\| transposase for insertion sequence element IS200 [Salmonella enterica s... gi\|197363908, gi... - gi\|197364371\|ref\|YP_002144008.1\| transposase for insertion sequence element IS200 [Salmonella enteri...	214.0	[0..4]	[153..3]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREDNQSLSH TTWNCKYHIV FAPKYRRQII YGRYKASIGR IIRDLCERKG VIIHEANACS  60
   61 DHIHMLISIP PKLSVSSFMG YLKGKSSLMI FDKHANLKYK YGNRKFWCRG YYVDTVGRNQ 120
  121 KVIAEYIQNQ LQEDRVADQL TLFESVDPFT GEINKRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.045757
Match:	2ec2A
Description:	No description for 2ec2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits