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Protein Overview: lcl|NC_016856.1_...

General Information:
Name(s) found: lcl|NC_016856.1_cdsid_YP_005235713.1 [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
lcl|NC_016856.1_cdsid_YP_005236530.1 [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
lcl|NC_016856.1_cdsid_YP_005236657.1 [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
lcl|NC_016856.1_cdsid_YP_005236988.1 [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
lcl|NC_016856.1_cdsid_YP_005237596.1 [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
lcl|NC_016856.1_cdsid_YP_005237756.1 [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
lcl|NC_016856.1_cdsid_YP_005238557.1 [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
lcl|NC_016856.1_cdsid_YP_005239472.1 [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
lcl|NC_016856.1_cdsid_YP_005239675.1 [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
Description(s) found:
Found 9 descriptions.
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  • [gene=tnpA_1] [protein=transposase] [protein_id=YP_005235713.1] [location=80499..80957] [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
  • [gene=tnpA_2] [protein=transposase] [protein_id=YP_005236530.1] [location=874624..875082] [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
  • [gene=tnpA_3] [protein=transposase] [protein_id=YP_005236657.1] [location=983495..983953] [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
  • [gene=tnpA_4] [protein=transposase] [protein_id=YP_005236988.1] [location=1273020..1273478] [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
  • [gene=tnpA_5] [protein=transposase] [protein_id=YP_005237596.1] [location=1786299..1786757] [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
  • [gene=tnpA_6] [protein=transposase] [protein_id=YP_005237756.1] [location=complement(1925975..1926433)] [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
  • [gene=tnpA_8] [protein=transposase] [protein_id=YP_005238557.1] [location=complement(2630883..2631341)] [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
  • [gene=tnpA_9] [protein=transposase] [protein_id=YP_005239472.1] [location=complement(3477916..3478374)] [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
  • [gene=tnpA_10] [protein=transposase for IS200] [protein_id=YP_005239675.1] [location=complement(3649055..3649513)] [Salmonella_enterica_subspecies_enterica_serovar_Typhimurium_14028S.fasta]
    • Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
    Length: 152 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDEKSLAHT RWNCKYHIVF APKYRRQAFY GEKRRAVGSI LRKLCEWKNV RILEAECCAD  60
   61 HIHMLLEIPP KMSVSSFMGY LKGKSSLMLY EQFGDLKFKY RNREFWCRGY YVDTVGKNTA 120
  121 KIQDYIKHQL EEDKMGEQLS IPYPGSPFTG RK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] PSI-BLAST 44.09691 No description for 2ec2A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle