YRC Public Data Repository - Protein Structure Prediction

Protein:	GCH1L_STRPN
Organism:	Streptococcus pneumoniae TIGR4
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCH1L_STRPN.

Description	E-value	Query Range	Subject Range
gi\|225861441, gi... - gi\|225861441\|ref\|YP_002742950.1\| hypothetical protein SPT_1550 [Streptococcus pneumoniae Taiwan19F-1... gi\|242244826, gi... - gi\|242244826\|ref\|ZP_04799263.1\| protein of hypothetical function DUF34 [Streptococcus pneumoniae TCH... gi\|116517031, gi... - gi\|116517031\|ref\|YP_816891.1\| hypothetical protein SPD_1434 [Streptococcus pneumoniae D39], gi\|11607... gi\|148988662, gi... - gi\|148988662\|ref\|ZP_01820095.1\| hypothetical protein CGSSp6BS73_09059 [Streptococcus pneumoniae SP6-... gi\|25509065 - pir\|\|E98054 conserved hypothetical protein spr1462 [imported] - Streptococcus pneumoniae (strain R6) gi\|15903505, gi\|... - gi\|15903505\|ref\|NP_359055.1\| hypothetical protein spr1462 [Streptococcus pneumoniae R6], gi\|15459119...	331.0	[0..1]	[265..1]
gi\|93279811, gi\|... - gi\|93279811\|pdb\|2FYW\|C Chain C, Crystal Structure Of A Conserved Protein Of Unknown Function From St...	319.0	[0..3]	[265..5]
gi\|22534232, gi\|... - gi\|22537360\|ref\|NP_688211.1\| hypothetical protein SAG1202 [Streptococcus agalactiae 2603V/R], gi\|225...	307.0	[0..1]	[265..1]
gi\|76798340, gi\|... - gi\|76798340\|ref\|ZP_00780584.1\| conserved hypothetical protein TIGR00486 [Streptococcus agalactiae 18... gi\|25011324, gi\|... - gi\|25011324\|ref\|NP_735719.1\| hypothetical protein gbs1275 [Streptococcus agalactiae NEM316], gi\|2441... gi\|77407819, gi\|... - gi\|77407819\|ref\|ZP_00784572.1\| conserved hypothetical protein TIGR00486 [Streptococcus agalactiae CO...	307.0	[0..1]	[265..1]
gi\|226819222 - gi\|226819222\|ref\|ZP_03808341.1\| hypothetical protein LgasM_00975 [Lactobacillus gasseri MV-22] gi\|238833970, gi... - gi\|238853398\|ref\|ZP_04643777.1\| conserved hypothetical protein [Lactobacillus gasseri 202-4], gi\|238... gi\|23003600 - gi\|23003600\|ref\|ZP_00047257.1\| COG0327: Uncharacterized conserved protein [Lactobacillus gasseri] gi\|116095330, gi... - gi\|23003600\|ref\|ZP_00047257.1\| hypothetical protein Lgas_03001422 [Lactobacillus gasseri ATCC 33323]...	306.0	[0..2]	[265..3]
gi\|77161151, gi\|... - gi\|77412855\|ref\|ZP_00789060.1\| conserved hypothetical protein TIGR00486 [Streptococcus agalactiae 51... gi\|77411726, gi\|... - gi\|77411726\|ref\|ZP_00788064.1\| conserved hypothetical protein TIGR00486 [Streptococcus agalactiae CJ...	306.0	[0..1]	[265..1]
gi\|77175992, gi\|... - gi\|77405410\|ref\|ZP_00782504.1\| conserved hypothetical protein TIGR00486 [Streptococcus agalactiae H3... gi\|76788106, gi\|... - gi\|76788106\|ref\|YP_329902.1\| NIF3 family protein [Streptococcus agalactiae A909], gi\|76563163\|gb\|ABA...	305.0	[0..1]	[265..1]
gi\|41583517, gi\|... - gi\|42519229\|ref\|NP_965159.1\| hypothetical protein LJ1304 [Lactobacillus johnsonii NCC 533], gi\|41583...	304.0	[0..2]	[265..3]
gi\|24379860, gi\|... - gi\|24379860\|ref\|NP_721815.1\| hypothetical protein SMU.1463c [Streptococcus mutans UA159], gi\|2437783...	304.0	[0..1]	[265..1]
gi\|81096591, gi\|... - gi\|81096591\|ref\|ZP_00874930.1\| Protein of unknown function DUF34 [Streptococcus suis 89/1591], gi\|80...	303.0	[0..1]	[265..1]

Back

Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLASEVIQAY EAFCPQEFSM EGDSRGLQIG TLDKGIQRVM VALDIREETV AEAIEKGVDL  60
   61 IIVKHAPIFR PIKDLLASRP QNQIYIDLIK HDIAVYVSHT NIDIVENGLN DWFCQMLGIE 120
  121 ETTYLQETGP ERGIGRIGNI QPQTFWELAQ QVKQVFDLDS LRMVHYQEDD LQKPISRVAI 180
  181 CGGSGQSFYK DALAKGADVY ITGDIYYHTA QDMLSDGLLA LDPGHYIEVI FVEKIAALLS 240
  241 QWKEDKGWSI DILPSQASTN PFHHI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.39794
Match:	2fywA
Description:	No description for 2fywA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits