YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29604466, gi\|...
Organism:	Streptomyces avermitilis MA-4680
Length:	67 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29604466, gi|....

Description	E-value	Query Range	Subject Range
gi\|116651857, gi... - gi\|67661612\|ref\|ZP_00458904.1\| Cold-shock protein, DNA-binding [Burkholderia cenocepacia HI2424], gi...	117.0	[0..1]	[66..104]
gi\|23004357 - gi\|23004357\|ref\|ZP_00047730.1\| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1]	116.0	[0..1]	[66..1]
gi\|25029285, gi\|... - gi\|25029285\|ref\|NP_739339.1\| hypothetical protein CE2729 [Corynebacterium efficiens YS-314], gi\|2349...	116.0	[0..1]	[66..185]
gi\|34498661, gi\|... - gi\|34498661\|ref\|NP_902876.1\| cold shock transcription regulator protein [Chromobacterium violaceum A...	115.0	[0..1]	[66..44]
gi\|116609147, gi... - gi\|66963407\|ref\|ZP_00410979.1\| Cold-shock protein, DNA-binding [Arthrobacter sp. FB24], gi\|66871067\|...	115.0	[0..1]	[66..1]
gi\|82703364, gi\|... - gi\|82703364\|ref\|YP_412930.1\| cold-shock DNA-binding domain-containing protein [Nitrosospira multifor...	113.0	[0..1]	[67..1]
gi\|17431526 - gi\|17431526\|emb\|CAD18204.1\| probable cold shock activator transcription regulator protein [Ralstonia... gi\|17549274 - gi\|17549274\|ref\|NP_522614.1\| cold shock-like transcription regulator protein [Ralstonia solanacearum... gi\|83749154, gi\|... - gi\|83749154\|ref\|ZP_00946157.1\| Cold shock protein [Ralstonia solanacearum UW551], gi\|83724150\|gb\|EAP...	113.0	[0..1]	[67..1]
gi\|41725001, gi\|... - gi\|71907020\|ref\|YP_284607.1\| cold-shock DNA-binding protein family protein [Dechloromonas aromatica ...	113.0	[0..1]	[66..1]
gi\|76581194, gi\|... - gi\|76811741\|ref\|YP_332524.1\| cold shock transcription regulator protein [Burkholderia pseudomallei 1... gi\|83654226, gi\|... - gi\|83720401\|ref\|YP_441317.1\| cold-shock domain-contain protein [Burkholderia thailandensis E264], gi...	113.0	[0..1]	[67..15]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGTVKWFN AEKGFGFIEQ EGGGPDVFVH YSAINSAGFR ELQEGQKVNF DVTQGPKGPQ  60
   61 AENVTPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.154902
Match:	1mjcA
Description:	CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.67999218416128	bayes_pls_golite062009
DNA binding	2.0554473444871	bayes_pls_golite062009
binding	1.49502978097244	bayes_pls_golite062009
transcription regulator activity	0.537716356194117	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: