YRC Public Data Repository - Protein Structure Prediction

Protein:	PDXS_STAAS
Organism:	Staphylococcus aureus subsp. aureus MSSA476
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDXS_STAAS.

Description	E-value	Query Range	Subject Range
PDX1_HEVBR - Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1	409.0	[0..2]	[293..17]
NbS00025844g0001.1 - protein AED:0.00 eAED:0.00 QI:0\|-1\|0\|1\|-1\|1\|1\|0\|309; (*GB) gi\|46399269\|gb\|AAS92255.1\| (e_value=0.0) ... gi\|46399269, gi\|... - gi\|46399271\|gb\|AAS92256.1\| putative pyridoxine biosynthesis protein isoform B [Nicotiana tabacum], g...	407.0	[0..2]	[293..18]
PDXS_THET2 - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / D...	407.0	[0..4]	[295..2]
PDXS_THET8 - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM ...	407.0	[0..4]	[295..2]
PDXS_CHLAA - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 63... gi\|53797482 - ref\|ZP_00358278.1\| COG0214: Pyridoxine biosynthesis enzyme [Chloroflexus aurantiacus] PDXS_CHLSY - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 63...	406.0	[0..4]	[295..2]
gi\|72256517 - gi\|72256517\|gb\|AAZ67141.1\| pyridoxine biosynthesis protein [Lotus corniculatus var. japonicus]	406.0	[0..2]	[293..18]
PDX1_PHAVU - Pyridoxal 5'-phosphate synthase subunit PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1	405.0	[0..2]	[293..20]
PDX13_ARATH - Pyridoxal 5'-phosphate synthase subunit PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2	405.0	[0..2]	[293..17]
gi\|92870196, gi\|... - gi\|92870196\|gb\|ABE79531.1\| Vitamin B6 biosynthesis protein [Medicago truncatula], gi\|72256515\|gb\|AAZ...	404.0	[0..7]	[293..27]

Back

Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIIGSDRV KRGMAEMQKG GVIMDVVNAE QARIAEEAGA VAVMALERVP SDIRAAGGVA  60
   61 RMANPKIVEE VMNAVSIPVM AKARIGHITE ARVLEAMGVD YIDESEVLTP ADEEYHLRKD 120
  121 QFTVPFVCGC RNLGEAARRI GEGAAMLRTK GEPGTGNIVE AVRHMRQVNS EVSRLTVMND 180
  181 DEIMTFAKDI GAPYEILKQI KDNGRLPVVN FAAGGVATPQ DAALMMELGA DGVFVGSGIF 240
  241 KSEDPEKFAK AIVQATTHYQ DYELIGRLAS ELGTAMKGLD INQLSLEERM QERGW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.0
Match:	1znnA
Description:	Structure of the synthase subunit of PLP synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.44231061702877	bayes_pls_golite062009
ribulose-phosphate 3-epimerase activity	1.56591581078504	bayes_pls_golite062009
binding	0.283052085721618	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.21095259308705	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: