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Protein Overview: NbS00025844g0001.1

General Information:
Name(s) found: NbS00025844g0001.1 [NBenthLuteoviridaecRAPBSAProtA-contam.fasta]
Description(s) found:
  • protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|46399269|gb|AAS92255.1| (e_value=0.0) putative pyridoxine biosynthesis protein isoform A [Nicotiana tabacum];; (*SWP) sp|Q39963|PDX1_HEVBR (e_value=0.0) Probable pyridoxal biosynthesis protein PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1;; (*TAIR) AT5G01410.1 (e_value=0.0) | Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 | Aldolase-type TIM barrel family protein | chr5:172576-173505 REVERSE LENGTH=309;; (*ITAG) Solyc06g081980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44239265-44240194 transcript_region:SL2.40ch06:44239265..44240194+ go_terms:GO:0046982,GO:0042803 functional_description:"Pyridoxal biosynthesis lyase pdxS (AHRD V1 ***- D0MQW5_PHYIN); contains Interpro domain(s) IPR001852 Vitamin B6 biosynthesis protein "; [NBenthLuteoviridaecRAPBSAProtA-contam.fasta]
    • Organism: Nicotiana benthamiana
    Length: 309 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSGVVTLY GNGALTETTK QSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM  60
   61 ALERVPADIR AQGGVARMSD PQLIKEIKQA VTIPVMAKAR IGHFVEAQIL EAIGIDYVDE 120
  121 SEVLTLADDE NHINKHNFRI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNIIEAVRH 180
  181 VRSVMGDIRV LRNMDDDEVF TFAKKLQAPY DLVMQTKQLG RLPVVHFAAG GVATPADAAL 240
  241 MMQLGCDGVF VGSGIFKSGD PAKRGRAIVQ AVTHYSDPGL LAEISCGLGE AMVGINLDDK 300
  301 VERYANRSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle