YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253608, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253608, gi|....

Description	E-value	Query Range	Subject Range
gi\|254932465, gi... - gi\|254932465\|ref\|ZP_05265824.1\| transcription antitermination protein NusG [Listeria monocytogenes H... gi\|254825710 - gi\|254825710\|ref\|ZP_05230711.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|225875336, gi... - gi\|226222874\|ref\|YP_002756981.1\| transcription antitermination factor [Listeria monocytogenes Clip81... gi\|217965667, gi... - gi\|217965667\|ref\|YP_002351345.1\| transcription termination/antitermination factor NusG [Listeria mon... gi\|224498908 - gi\|224498908\|ref\|ZP_03667257.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|224502460 - gi\|224502460\|ref\|ZP_03670767.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|255520310 - gi\|255520310\|ref\|ZP_05387547.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|255030086 - gi\|255030086\|ref\|ZP_05302037.1\| transcription antitermination protein NusG [Listeria monocytogenes L... gi\|126941162, gi... - gi\|254900573\|ref\|ZP_05260497.1\| transcription antitermination protein NusG [Listeria monocytogenes J... gi\|255026643 - gi\|255026643\|ref\|ZP_05298629.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|46906479, gi\|... - gi\|46906479\|ref\|YP_012868.1\| transcription antitermination protein NusG [Listeria monocytogenes str.... gi\|153198260, gi... - gi\|254831929\|ref\|ZP_05236584.1\| transcription antitermination protein NusG [Listeria monocytogenes 1... gi\|254991754 - gi\|254991754\|ref\|ZP_05273944.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|16802292 - gi\|16802292\|ref\|NP_463777.1\| transcription antitermination protein NusG [Listeria monocytogenes EGD-... gi\|254872141, gi... - gi\|254872141\|ref\|ZP_05244851.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|254913476 - gi\|254913476\|ref\|ZP_05263488.1\| transcription antitermination protein NusG [Listeria monocytogenes J... gi\|47017011, gi\|... - gi\|47094614\|ref\|ZP_00232254.1\| transcription antitermination factor NusG [Listeria monocytogenes str... gi\|254828706, gi... - gi\|254828706\|ref\|ZP_05233393.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|254878812 - gi\|254878812\|ref\|ZP_05251522.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|25299620, gi\|... - pir\|\|AG1105 transcription antitermination factor nusG [imported] - Listeria monocytogenes (strain EG... gi\|254937943, gi... - gi\|254937943\|ref\|ZP_05269640.1\| transcription antitermination protein NusG [Listeria monocytogenes F... gi\|254853487 - gi\|254853487\|ref\|ZP_05242835.1\| transcription antitermination protein NusG [Listeria monocytogenes F...	4.0E-58	[1..177]	[1..177]
gi\|89358258, gi\|... - gi\|89358258\|ref\|ZP_01196080.1\| transcription antitermination protein NusG [Xanthobacter autotrophicu...	2.0E-56	[1..177]	[98..273]
gi\|98660440 - gi\|98660440\|dbj\|GAA02282.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	4.0E-56	[1..177]	[4..177]
gi\|36783867, gi\|... - gi\|37524443\|ref\|NP_927787.1\| transcription antitermination protein NusG [Photorhabdus luminescens su...	4.0E-56	[2..176]	[6..180]
gi\|124531368, gi... - gi\|124531368\|ref\|ZP_01701678.1\| NusG antitermination factor [Escherichia coli B], gi\|124498582\|gb\|EA... gi\|218358575, gi... - gi\|218551034\|ref\|YP_002384825.1\| transcription antitermination protein NusG [Escherichia fergusonii ... gi\|218363305, gi... - gi\|218556536\|ref\|YP_002389450.1\| transcription antitermination protein NusG [Escherichia coli IAI1],... gi\|218697689, gi... - gi\|218697689\|ref\|YP_002405356.1\| transcription antitermination protein NusG [Escherichia coli 55989]... gi\|218372598, gi... - gi\|218702612\|ref\|YP_002410241.1\| transcription antitermination protein NusG [Escherichia coli IAI39]... gi\|218707600, gi... - gi\|218707600\|ref\|YP_002415119.1\| transcription antitermination protein NusG [Escherichia coli UMN026... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|157069130, gi... - gi\|75197846\|ref\|ZP_00707916.1\| COG0250: Transcription antiterminator [Escherichia coli HS], gi\|15716... gi\|73857953, gi\|... - gi\|74314476\|ref\|YP_312895.1\| transcription antitermination protein NusG [Shigella sonnei Ss046], gi\|... gi\|157154871, gi... - gi\|75188712\|ref\|ZP_00701979.1\| COG0250: Transcription antiterminator [Escherichia coli E24377A], gi\|... gi\|89110057, gi\|... - gi\|89110057\|ref\|AP_003837.1\| transcription termination factor [Escherichia coli str. K-12 substr. W3... gi\|81242991, gi\|... - gi\|82778843\|ref\|YP_405192.1\| transcription antitermination protein NusG [Shigella dysenteriae Sd197]... gi\|254795980, gi... - gi\|254795980\|ref\|YP_003080817.1\| transcription termination factor [Escherichia coli O157:H7 str. TW1... gi\|81247735, gi\|... - gi\|82546324\|ref\|YP_410271.1\| transcription antitermination protein NusG [Shigella boydii Sb227], gi\|... gi\|254163923, gi... - gi\|254163923\|ref\|YP_003047031.1\| transcription antitermination protein NusG [Escherichia coli B str.... gi\|226838472, gi... - gi\|254039237\|ref\|ZP_04873286.1\| transcription termination/antitermination factor NusG [Escherichia s... gi\|254290673, gi... - gi\|254290673\|ref\|YP_003056421.1\| transcription antitermination protein NusG [Escherichia coli BL21(D... gi\|242379512, gi... - gi\|251787239\|ref\|YP_003001543.1\| hypothetical protein B21_03811 [Escherichia coli BL21], gi\|24237951... gi\|238903038, gi... - gi\|238903038\|ref\|YP_002928834.1\| transcription termination factor [Escherichia coli BW2952], gi\|2388... NUSG_SHIFL - Transcription termination/antitermination protein NusG OS=Shigella flexneri GN=nusG PE=3 SV=2 gi\|187427213, gi... - gi\|187730221\|ref\|YP_001882667.1\| transcription termination/antitermination factor NusG [Shigella boy... NUSG_ECOLI - Transcription antitermination protein nusG - Escherichia coli gi\|15834159, gi\|... - gi\|15834159\|ref\|NP_312932.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 st... gi\|188487728, gi... - gi\|188492529\|ref\|ZP_02999799.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|24115267, gi\|... - gi\|24115267\|ref\|NP_709777.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 3... gi\|110807832, gi... - gi\|110807832\|ref\|YP_691352.1\| transcription antitermination protein NusG [Shigella flexneri 5 str. 8... gi\|195939607 - gi\|195939607\|ref\|ZP_03084989.1\| transcription antitermination protein NusG [Escherichia coli O157:H7... gi\|30042995, gi\|... - gi\|30064735\|ref\|NP_838906.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 2... gi\|208812131, gi... - gi\|208812131\|ref\|ZP_03253460.1\| transcription termination/antitermination factor NusG [Escherichia c... NUSG_ECO57 - Transcription termination/antitermination protein NusG OS=Escherichia coli O157:H7 GN=nusG PE=3 SV=2 gi\|208739955, gi... - gi\|208819832\|ref\|ZP_03260152.1\| transcription termination/antitermination factor NusG [Escherichia c... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|209399471, gi... - gi\|209399471\|ref\|YP_002273498.1\| transcription termination/antitermination factor NusG [Escherichia ... gi\|15804572, gi\|... - gi\|15804572\|ref\|NP_290613.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 ED... gi\|209914719, gi... - gi\|209921460\|ref\|YP_002295544.1\| transcription antitermination protein NusG [Escherichia coli SE11],... gi\|217321655, gi... - gi\|217325434\|ref\|ZP_03441518.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|189354220, gi... - gi\|189354220\|gb\|EDU72639.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189359775, gi... - gi\|189359775\|gb\|EDU78194.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189001643, gi... - gi\|189001643\|gb\|EDU70629.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189370168, gi... - gi\|189370168\|gb\|EDU88584.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|170022015, gi... - gi\|170022015\|ref\|YP_001726969.1\| transcription antitermination protein NusG [Escherichia coli ATCC 8... gi\|170083442, gi... - gi\|170083442\|ref\|YP_001732762.1\| transcription termination factor [Escherichia coli str. K-12 substr... gi\|170682823, gi... - gi\|170682823\|ref\|YP_001746366.1\| transcription termination/antitermination factor NusG [Escherichia ...	4.0E-56	[2..176]	[6..180]
gi\|56418627, gi\|... - gi\|56418627\|ref\|YP_145945.1\| transcription antitermination protein NusG [Geobacillus kaustophilus HT...	6.0E-56	[1..177]	[1..177]
gi\|238717476, gi... - gi\|77960657\|ref\|ZP_00824519.1\| COG0250: Transcription antiterminator [Yersinia mollaretii ATCC 43969...	7.0E-56	[2..176]	[6..180]
gi\|254555723, gi... - gi\|254555723\|ref\|YP_003062140.1\| transcription antitermination protein NusG [Lactobacillus plantarum... gi\|28377493, gi\|... - gi\|28377493\|ref\|NP_784385.1\| transcription antitermination protein NusG [Lactobacillus plantarum WCF...	1.0E-55	[1..177]	[5..181]
gi\|229549155, gi... - gi\|229549155\|ref\|ZP_04437880.1\| transcription antitermination protein NusG [Enterococcus faecalis AT... gi\|238831189, gi... - gi\|238856190\|ref\|ZP_04646466.1\| transcription termination/antitermination factor NusG [Enterococcus ... gi\|29377206, gi\|... - gi\|29377206\|ref\|NP_816360.1\| transcription antitermination protein NusG [Enterococcus faecalis V583]... gi\|227554214, gi... - gi\|227554214\|ref\|ZP_03984261.1\| transcription antitermination protein NusG [Enterococcus faecalis HH... gi\|229544889, gi... - gi\|229544889\|ref\|ZP_04433614.1\| transcription antitermination protein NusG [Enterococcus faecalis TX...	1.0E-55	[2..177]	[5..180]
gi\|219536733, gi... - gi\|219666473\|ref\|YP_002456908.1\| NusG antitermination factor [Desulfitobacterium hafniense DCB-2], g... gi\|89893200, gi\|... - gi\|89893200\|ref\|YP_516687.1\| hypothetical protein DSY0454 [Desulfitobacterium hafniense Y51], gi\|893...	1.0E-55	[1..177]	[1..174]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSWYVVHT YSGYENKVKA NLEKRVESMG MQDKIFRVVV PEEVEVEMKN GKEKLMKRKV  60
   61 FPGYVLVELI MTDDSWYVVR NTPGVTGFVG SSGSGSKPSP LLEEEVVTIM KHMGMDNEVV 120
  121 DFDFELHETV RVNEGPFADY TGAIEEIDVE KKKVSVLVDM FGRETPVELD FHQIEKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1m1gA
Description:	N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.3828495299519	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
structural constituent of ribosome	2.40236111142017	bayes_pls_golite062009
structural molecule activity	2.11748533169546	bayes_pls_golite062009
nucleic acid binding	0.761013355804059	bayes_pls_golite062009
binding	0.302568764609847	bayes_pls_golite062009
DNA binding	0.302556727687398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: