YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254221, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254221, gi|....

Description	E-value	Query Range	Subject Range
gi\|56908581, gi\|... - gi\|56962344\|ref\|YP_174069.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus clausii KSM-...	4.0E-90	[2..272]	[39..333]
gi\|89158826, gi\|... - gi\|89211579\|ref\|ZP_01189937.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	9.0E-90	[4..272]	[8..301]
gi\|78044045, gi\|... - gi\|78044045\|ref\|YP_359973.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Carboxydot...	1.0E-89	[1..269]	[2..293]
gi\|50843594, gi\|... - gi\|50843594\|ref\|YP_056821.1\| putative peptide ABC transporter, ATP-binding protein [Propionibacteriu...	5.0E-89	[2..272]	[11..308]
gi\|146296065, gi... - gi\|82500758\|ref\|ZP_00886157.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	1.0E-88	[4..271]	[5..293]
gi\|118430852, gi... - gi\|118430852\|ref\|NP_146917.2\| ABC transporter, ATP binding protein [Aeropyrum pernix K1], gi\|1160621...	2.0E-88	[5..272]	[4..275]
gi\|20515603, gi\|... - gi\|20807110\|ref\|NP_622281.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone... gi\|20807110 - gi\|20807110\|ref\|NP_622281.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone...	5.0E-88	[4..272]	[7..294]
gi\|18312553, gi\|... - gi\|18312553\|ref\|NP_559220.1\| multiple sugar-binding transport ATP-binding [Pyrobaculum aerophilum st...	2.0E-87	[1..253]	[1..250]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKALETKRL TLSYGETIII DELNLEIPKG EITIFIGSNG CGKSTLLRSL ARLLKPTTGD  60
   61 ILLDNQAIQS MQTKQIARQM AILPQGPQAP EGLTVLQLVK QGRYPYQTWL KQWSEKDEEM 120
  121 VQNALAATGM TEFAERDVHA LSGGQRQRAW IAMTLAQDTD IILLDEPTTY LDMTHQIEVL 180
  181 DLLFELNETE QRTIVMVLHD LNLACRYADN IVAIQDKQIY AQGKPEEVVD EKLVRDVFRM 240
  241 ECQISTDPLF GTPLCIPHGK GRRVRKEVAH AMR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.39794
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits