YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254300, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254300, gi|....

Description	E-value	Query Range	Subject Range
gi\|25006075, gi\|... - gi\|25057836\|ref\|NP_740068.1\| cytochrome c oxidase subunit III [Caranx melampygus], gi\|25006075\|dbj\|B...	1.0E-59	[3..198]	[62..261]
gi\|16267261, gi\|... - gi\|16357353\|ref\|NP_443664.1\| cytochrome c oxidase subunit III [Mastacembelus favus], gi\|16267261\|dbj...	1.0E-59	[3..198]	[62..261]
gi\|25006061, gi\|... - gi\|25057822\|ref\|NP_740055.1\| cytochrome c oxidase subunit III [Carangoides armatus], gi\|25006061\|dbj...	1.0E-59	[3..198]	[62..261]
gi\|38603501, gi\|... - gi\|58372104\|ref\|YP_194930.1\| cytochrome c oxidase subunit III [Trachurus trachurus], gi\|38603501\|dbj...	2.0E-59	[3..198]	[62..261]
gi\|14588626, gi\|... - gi\|14602392\|ref\|NP_148770.1\| cytochrome c oxidase subunit III [Trachurus japonicus], gi\|14588640\|dbj...	2.0E-59	[3..198]	[62..261]
gi\|71657945, gi\|... - gi\|71657945\|ref\|YP_272021.1\| cytochrome c oxidase subunit III [Oreochromis mossambicus], gi\|51011729...	4.0E-59	[3..198]	[62..261]
gi\|29501129\|dbj\|... - cytochrome c oxidase subunit III [Eigenmannia sp.], cytochrome oxidase subunit 3 [Eigenmannia sp.] gi\|29501129, gi\|... - gi\|29570648\|ref\|NP_818910.1\| cytochrome c oxidase subunit III [Eigenmannia sp. CBM-ZF-10620], gi\|295...	4.0E-59	[3..198]	[62..261]
gi\|29501143, gi\|... - gi\|29570634\|ref\|NP_818793.1\| cytochrome c oxidase subunit III [Apteronotus albifrons], gi\|29501143\|d...	6.0E-59	[3..198]	[62..261]
gi\|51235011, gi\|... - gi\|51235011\|ref\|YP_063501.1\| cytochrome c oxidase subunit III [Carassius auratus x Cyprinus carpio],... gi\|55338285, gi\|... - gi\|55338285\|ref\|YP_133899.1\| cytochrome c oxidase subunit III [Carassius auratus x Cyprinus carpio x... COX3_CYPCA - Cytochrome c oxidase subunit 3 OS=Cyprinus carpio GN=mt-co3 PE=2 SV=2 gi\|56798135, gi\|... - gi\|56912174\|ref\|YP_173342.1\| cytochrome c oxidase subunit III [Carassius auratus auratus], gi\|567981... gi\|254033652, gi... - gi\|254033652\|ref\|YP_003058371.1\| cytochrome c oxidase subunit III [natural gynogenetic Carassius aur...	8.0E-59	[3..198]	[62..261]
gi\|15987265, gi\|... - gi\|15987265\|ref\|NP_387478.1\|COX3_15795 cytochrome c oxidase subunit III [Neoceratodus forsteri], gi\|...	8.0E-59	[3..198]	[62..261]

Back

Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALDKSLPL EYQSEQSRLN ILGFWIFLGA EIMLFATLFA SYLVLAGRTA DGPTPAQLFE  60
   61 LKTLLIQTLL LLTSSFTCGI VIHEMRKHNQ KAMLGWFVLT LLLGAGFLFF EIEEFIMYIG 120
  121 EGATIQTSAF LSGFFVLLGT HGAHVTGGII WAICVIIQIL KRGLTPVTAR KVFIISLYWH 180
  181 FLDLVWVFIY TLVYLNGMVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.154902
Match:	1fftC
Description:	Cytochrome O ubiquinol oxidase, subunit III
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transmembrane transporter activity	8.59128089167986	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	6.88271413040221	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	6.58538119091174	bayes_pls_golite062009
cation transmembrane transporter activity	6.45649160474673	bayes_pls_golite062009
ion transmembrane transporter activity	6.3484316712663	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	5.97318568679269	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.91828857375608	bayes_pls_golite062009
heme-copper terminal oxidase activity	5.83100344847255	bayes_pls_golite062009
cytochrome o ubiquinol oxidase activity	5.57652284753906	bayes_pls_golite062009
cytochrome-c oxidase activity	4.7931528448557	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	4.7931528448557	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	4.7931528448557	bayes_pls_golite062009
transporter activity	4.25438846058626	bayes_pls_golite062009
transmembrane transporter activity	4.17164895597342	bayes_pls_golite062009
substrate-specific transporter activity	4.04860232618097	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	3.26454642730214	bayes_pls_golite062009
oxidoreductase activity	2.87095049256457	bayes_pls_golite062009
catalytic activity	1.98531969314183	bayes_pls_golite062009
active transmembrane transporter activity	0.371119126778133	bayes_pls_golite062009
primary active transmembrane transporter activity	0.361032852452888	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: