YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49183980, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49183980, gi|....

Description	E-value	Query Range	Subject Range
gi\|228951505, gi... - gi\|228951505\|ref\|ZP_04113611.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228839765, gi... - gi\|228919864\|ref\|ZP_04083220.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228657024, gi... - gi\|229126444\|ref\|ZP_04255459.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228674854, gi... - gi\|229108599\|ref\|ZP_04238211.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|218232750, gi... - gi\|218232750\|ref\|YP_002365797.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|229042878, gi... - gi\|229042878\|ref\|ZP_04190613.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228802279, gi... - gi\|228957401\|ref\|ZP_04119157.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|229189225, gi... - gi\|229189225\|ref\|ZP_04316249.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|29894731, gi\|... - gi\|30019188\|ref\|NP_830819.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus cere... gi\|206968198, gi... - gi\|206968198\|ref\|ZP_03229154.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|228605929, gi... - gi\|229177567\|ref\|ZP_04304945.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228633986, gi... - gi\|229149344\|ref\|ZP_04277580.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|229143742, gi... - gi\|229143742\|ref\|ZP_04272163.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu...	8.0E-75	[1..186]	[1..186]
gi\|47564990, gi\|... - gi\|47564990\|ref\|ZP_00236034.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ce...	1.0E-74	[1..186]	[1..186]
gi\|42736117, gi\|... - gi\|42780199\|ref\|NP_977446.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus cere...	1.0E-74	[1..186]	[1..186]
gi\|89150031, gi\|... - gi\|89201904\|ref\|ZP_01180637.1\| Glycerol-3-phosphate responsive antiterminator [Bacillus cereus subsp...	6.0E-71	[1..186]	[1..186]
GLPP_BACSU - Glycerol uptake operon antiterminator regulatory protein OS=Bacillus subtilis GN=glpP PE=4 SV=1 GLPP_BACSU - Glycerol uptake operon antiterminator regulatory protein OS=Bacillus subtilis (strain 168) GN=glpP P...	9.0E-71	[1..184]	[2..185]
gi\|52002616, gi\|... - gi\|52784765\|ref\|YP_090594.1\| hypothetical protein BLi00993 [Bacillus licheniformis ATCC 14580], gi\|5...	4.0E-68	[1..183]	[1..183]
gi\|22778163, gi\|... - gi\|23099932\|ref\|NP_693398.1\| transcriptional antiterminator of glycerol uptake operon [Oceanobacillu...	1.0E-65	[8..181]	[7..180]
gi\|10173706, gi\|... - gi\|15613654\|ref\|NP_241957.1\| transcriptional antiterminator of glycerol uptake operon [Bacillus halo... gi\|25351889 - pir\|\|C83786 transcription antiterminator of glycerol uptake operon glpP [imported] - Bacillus halodu...	5.0E-65	[3..181]	[5..183]
gi\|172056751, gi... - gi\|68054590\|ref\|ZP_00538747.1\| Glycerol-3-phosphate responsive antiterminator [Exiguobacterium sibir...	2.0E-64	[1..184]	[1..184]
gi\|56380531, gi\|... - gi\|56420689\|ref\|YP_148007.1\| transcriptional antiterminator of glycerol uptake operon [Geobacillus k...	2.0E-64	[5..183]	[4..182]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFHEQKILP AVRQIKDLEK LLHSSYEYIV ILDIHVGQLK SVISLAKQYC KKVFLHVDLI  60
   61 HGLQSDGHAT EYLCQEFRPY GLLSTKASVI MKAKQKGVVA IQRIFLIDSS AMEKSCNLLE 120
  121 KTKPDYIEVL PGALTDVIAE VKERTGVPIL AGGFIRTVDD VERALNAGAT AITTSKRELW 180
  181 KHYQKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.39794
Match:	1vkfA
Description:	Crystal structure of Glycerol uptake operon antiterminator-related protein (TM1436) from Thermotoga maritima at 1.65 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.53572000448636	bayes_pls_golite062009
transcription antiterminator activity	1.03328675497923	bayes_pls_golite062009
binding	0.61117010765727	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: