YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255419, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	304 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255419, gi|....

Description	E-value	Query Range	Subject Range
gi\|228984647, gi... - gi\|228984647\|ref\|ZP_04144820.1\| Superoxide dismutase [Bacillus thuringiensis serovar tochigiensis BG... gi\|47569140, gi\|... - gi\|47569140\|ref\|ZP_00239828.1\| superoxide dismutase [Bacillus cereus G9241], gi\|47554211\|gb\|EAL12574... gi\|229155135, gi... - gi\|229155135\|ref\|ZP_04283247.1\| Superoxide dismutase [Bacillus cereus ATCC 4342], gi\|228628262\|gb\|EE...	0.0	[1..304]	[1..304]
gi\|89153692, gi\|... - gi\|89208376\|ref\|ZP_01186886.1\| Superoxide dismutase [Bacillus weihenstephanensis KBAB4], gi\|89153692... gi\|228651080, gi... - gi\|229132374\|ref\|ZP_04261228.1\| Superoxide dismutase [Bacillus cereus BDRD-ST196], gi\|228651080\|gb\|E...	0.0	[1..304]	[1..304]
gi\|75764309, gi\|... - gi\|75764309\|ref\|ZP_00743844.1\| Superoxide dismutase [Bacillus thuringiensis serovar israelensis ATCC...	0.0	[1..304]	[14..317]
gi\|89148826, gi\|... - gi\|89203155\|ref\|ZP_01181850.1\| Superoxide dismutase [Bacillus cereus subsp. cytotoxis NVH 391-98], g...	0.0	[1..304]	[1..304]
gi\|15614126, gi\|... - gi\|15614126\|ref\|NP_242429.1\| superoxide dismutase [Bacillus halodurans C-125], gi\|10174180\|dbj\|BAB05... gi\|25285828 - pir\|\|C83845 superoxide dismutase BH1563 [imported] - Bacillus halodurans (strain C-125)	2.0E-96	[13..304]	[7..293]
gi\|8347760 - gi\|8347760\|gb\|AAF74771.1\|AF264030_1 cytosolic manganese superoxide dismutase precursor; MnSOD [Calli...	3.0E-92	[46..300]	[23..284]
gi\|68300789, gi\|... - gi\|68300789\|gb\|AAY89338.1\| cytosolic manganese superoxide dismutase [Litopenaeus vannamei], gi\|66864...	6.0E-92	[46..300]	[24..285]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQGVFTDY FHEVESWCES VLHVLDSRAM EVYDVHMLAY KIQTLLDRMK EHEYDTDAEF  60
   61 MYEISDDVEH IQHHLQEVFV QGEEEYELCE RGDSERAVPI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGHTLPPLPY PYNALEPYIS REIMMLHHDK HHRSYVEGLN KAEKMMEEAR KTNQFDLIKH  60
   61 WEREAAFHGS GHYLHTIFWN NMKKGGGGSP RGALSHRIEQ DFGSFLRFQK HFTEAASKVE 120
  121 GSGWAILVWV PRSGRLEILQ STLHQLFTQW DTIPLLVLDV WEHAYYLQYQ NRKDEYIKNW 180
  181 WNVVNWPDVE KRFESAKQIE WTPY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.0
Match:	1n0jA
Description:	Mn superoxide dismutase (MnSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	7.08472506566271	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	7.08472506566271	bayes_pls_golite062009
oxidoreductase activity	2.73079314406851	bayes_pls_golite062009
protein binding	1.36581969443298	bayes_pls_golite062009
binding	1.30562201415299	bayes_pls_golite062009
antioxidant activity	0.766723962166325	bayes_pls_golite062009
cation binding	0.485672227923388	bayes_pls_golite062009
metal ion binding	0.485672227923388	bayes_pls_golite062009
ion binding	0.480092270451566	bayes_pls_golite062009
catalytic activity	0.390489225704392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: