YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255419, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	304 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255419, gi|....

Description	E-value	Query Range	Subject Range
gi\|228984647, gi... - gi\|228984647\|ref\|ZP_04144820.1\| Superoxide dismutase [Bacillus thuringiensis serovar tochigiensis BG... gi\|47569140, gi\|... - gi\|47569140\|ref\|ZP_00239828.1\| superoxide dismutase [Bacillus cereus G9241], gi\|47554211\|gb\|EAL12574... gi\|229155135, gi... - gi\|229155135\|ref\|ZP_04283247.1\| Superoxide dismutase [Bacillus cereus ATCC 4342], gi\|228628262\|gb\|EE...	0.0	[1..304]	[1..304]
gi\|89153692, gi\|... - gi\|89208376\|ref\|ZP_01186886.1\| Superoxide dismutase [Bacillus weihenstephanensis KBAB4], gi\|89153692... gi\|228651080, gi... - gi\|229132374\|ref\|ZP_04261228.1\| Superoxide dismutase [Bacillus cereus BDRD-ST196], gi\|228651080\|gb\|E...	0.0	[1..304]	[1..304]
gi\|75764309, gi\|... - gi\|75764309\|ref\|ZP_00743844.1\| Superoxide dismutase [Bacillus thuringiensis serovar israelensis ATCC...	0.0	[1..304]	[14..317]
gi\|89148826, gi\|... - gi\|89203155\|ref\|ZP_01181850.1\| Superoxide dismutase [Bacillus cereus subsp. cytotoxis NVH 391-98], g...	0.0	[1..304]	[1..304]
gi\|15614126, gi\|... - gi\|15614126\|ref\|NP_242429.1\| superoxide dismutase [Bacillus halodurans C-125], gi\|10174180\|dbj\|BAB05... gi\|25285828 - pir\|\|C83845 superoxide dismutase BH1563 [imported] - Bacillus halodurans (strain C-125)	2.0E-96	[13..304]	[7..293]
gi\|8347760 - gi\|8347760\|gb\|AAF74771.1\|AF264030_1 cytosolic manganese superoxide dismutase precursor; MnSOD [Calli...	3.0E-92	[46..300]	[23..284]
gi\|68300789, gi\|... - gi\|68300789\|gb\|AAY89338.1\| cytosolic manganese superoxide dismutase [Litopenaeus vannamei], gi\|66864...	6.0E-92	[46..300]	[24..285]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQGVFTDY FHEVESWCES VLHVLDSRAM EVYDVHMLAY KIQTLLDRMK EHEYDTDAEF  60
   61 MYEISDDVEH IQHHLQEVFV QGEEEYELCE RGDSERAVPI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGHTLPPLPY PYNALEPYIS REIMMLHHDK HHRSYVEGLN KAEKMMEEAR KTNQFDLIKH  60
   61 WEREAAFHGS GHYLHTIFWN NMKKGGGGSP RGALSHRIEQ DFGSFLRFQK HFTEAASKVE 120
  121 GSGWAILVWV PRSGRLEILQ STLHQLFTQW DTIPLLVLDV WEHAYYLQYQ NRKDEYIKNW 180
  181 WNVVNWPDVE KRFESAKQIE WTPY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.0
Match:	1n0jA
Description:	Mn superoxide dismutase (MnSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	7.08472506566271	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	7.08472506566271	bayes_pls_golite062009
oxidoreductase activity	2.73079314406851	bayes_pls_golite062009
protein binding	1.36581969443298	bayes_pls_golite062009
binding	1.30562201415299	bayes_pls_golite062009
antioxidant activity	0.766723962166325	bayes_pls_golite062009
cation binding	0.485672227923388	bayes_pls_golite062009
metal ion binding	0.485672227923388	bayes_pls_golite062009
ion binding	0.480092270451566	bayes_pls_golite062009
catalytic activity	0.390489225704392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: