YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261854, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	327 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261854, gi|....

Description	E-value	Query Range	Subject Range
gi\|170663531, gi... - gi\|170663531\|gb\|EDT16214.1\| aspartate--ammonia ligase [Clostridium perfringens E str. JGS1987], gi\|1... ASNA_CLOP1 - Aspartate--ammonia ligase OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB...	0.0	[2..327]	[10..336]
gi\|168212987, gi... - gi\|170715587\|gb\|EDT27769.1\| aspartate--ammonia ligase [Clostridium perfringens CPE str. F4969], gi\|1... ASNA_CLOPE - Aspartate--ammonia ligase OS=Clostridium perfringens (strain 13 / Type A) GN=asnA PE=3 SV=1 gi\|182382293, gi... - gi\|182382293\|gb\|EDT79772.1\| aspartate--ammonia ligase [Clostridium perfringens NCTC 8239], gi\|168215... ASNA_CLOPE - Aspartate--ammonia ligase OS=Clostridium perfringens GN=asnA PE=3 SV=1	0.0	[2..327]	[10..336]
ASNA_BACCN - Aspartate--ammonia ligase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	0.0	[1..327]	[1..327]
gi\|116630339, gi... - gi\|116630339\|ref\|YP_815606.1\| asparagine synthetase AsnA [Lactobacillus gasseri ATCC 33323], gi\|1160...	0.0	[2..327]	[26..353]
ASNA_CLOPS - Aspartate--ammonia ligase OS=Clostridium perfringens (strain SM101 / Type A) GN=asnA PE=3 SV=1	0.0	[2..327]	[10..336]
gi\|229150059, gi... - gi\|229150059\|ref\|ZP_04278282.1\| Aspartate--ammonia ligase [Bacillus cereus m1550], gi\|228633358\|gb\|E... gi\|229127177, gi... - gi\|229127177\|ref\|ZP_04256174.1\| Aspartate--ammonia ligase [Bacillus cereus BDRD-Cer4], gi\|228656293\|... ASNA_BACCR - Aspartate--ammonia ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... gi\|228725684, gi... - gi\|229043609\|ref\|ZP_04191316.1\| Aspartate--ammonia ligase [Bacillus cereus AH676], gi\|228725684\|gb\|E... gi\|228958138, gi... - gi\|228958138\|ref\|ZP_04119871.1\| Aspartate--ammonia ligase [Bacillus thuringiensis serovar pakistani ... ASNA_BACC4 - Aspartate--ammonia ligase OS=Bacillus cereus (strain B4264) GN=asnA PE=3 SV=1	0.0	[1..327]	[1..327]
gi\|47557528, gi\|... - gi\|47565538\|ref\|ZP_00236579.1\| aspartate--ammonia ligase [Bacillus cereus G9241], gi\|47557528\|gb\|EAL...	0.0	[1..327]	[1..327]
ASNA_BACC1 - Aspartate--ammonia ligase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=asnA PE=3 SV=1	0.0	[1..327]	[1..327]
gi\|229132680, gi... - gi\|229132680\|ref\|ZP_04261527.1\| Aspartate--ammonia ligase [Bacillus cereus BDRD-ST196], gi\|228650807... ASNA_BACWK - Aspartate--ammonia ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=asnA PE=3 SV=1	0.0	[1..327]	[1..327]

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Predicted Domain #1

Region A:
Residues: [1-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQSLMTVRE TQIAIKEVKT FFEDQLAKRL ELFRVSAPLF VTKKSGLNDH LNGVERPIEF  60
   61 DMLHSGEELE IVHSLAKWKR FALHEYGYEA GEGLYTNMNA IRRDEELDAT HSIYVDQWDW 120
  121 EKIVQKEWRT VDYLQKTVLT IYGIFKDLED HLFEKYPFLG KYLPEEIVFV TSQELEDKYP 180
  181 ELTPKDREHA IAKEHGAVFI IGIGDALRSG EKHDGRAADY DDWKLNGDIL FWHPVLQSSF 240
  241 ELSSMGIRVD SKSLDEQLTK TGEDFKREYD FHKGILEDVL PLTIGGGIGQ SRMCMYFLRK 300
  301 AHIGEVQSSV WPDDLREACK KENIHLF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	151.0
Match:	11asA
Description:	Asparagine synthetase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	3.95982081475525	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	3.95982081475525	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	3.9592004812151	bayes_pls_golite062009
ligase activity	3.05852492533937	bayes_pls_golite062009
catalytic activity	2.36416267096403	bayes_pls_golite062009
phenylalanine-tRNA ligase activity	0.27932659689192	bayes_pls_golite062009
serine-tRNA ligase activity	0.15245558407217	bayes_pls_golite062009
threonine-tRNA ligase activity	0.0873863095068197	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: