YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256118, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256118, gi|....

Description	E-value	Query Range	Subject Range
gi\|19888339, gi\|... - gi\|20095063\|ref\|NP_614910.1\| branched-chain amino acid aminotransferase [Methanopyrus kandleri AV19]...	6.0E-93	[1..293]	[1..294]
gi\|56415762, gi\|... - gi\|56415762\|ref\|YP_152837.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ... gi\|197364691, gi... - gi\|197364691\|ref\|YP_002144328.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub...	2.0E-92	[2..299]	[5..308]
ILVE_SALTY - Branched-chain-amino-acid aminotransferase OS=Salmonella typhimurium GN=ilvE PE=1 SV=2 ILVE_SALTI - Branched-chain-amino-acid aminotransferase OS=Salmonella typhi GN=ilvE PE=3 SV=2 ILVE_SALTY - Branched-chain-amino-acid aminotransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7... gi\|213981032 - gi\|213981032\|ref\|ZP_03408291.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|213864754 - gi\|213864754\|ref\|ZP_03386873.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... ILVE_SALTI - Branched-chain-amino-acid aminotransferase OS=Salmonella typhi GN=ilvE PE=3 SV=2 gi\|213646697 - gi\|213646697\|ref\|ZP_03376750.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|29143717, gi\|... - gi\|29143717\|ref\|NP_807059.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ... gi\|16762228 - gi\|16762228\|ref\|NP_457845.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. ... gi\|167553329, gi... - gi\|205322227\|gb\|EDZ10066.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. e... ILVE_SALTY - Branched-chain-amino-acid aminotransferase OS=Salmonella typhimurium GN=ilvE PE=1 SV=2 gi\|161617020, gi... - gi\|161617020\|ref\|YP_001590985.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub... lcl\|NC_016856.1_... - [gene=ilvE] [protein=branched-chain amino acid aminotransferase] [protein_id=YP_005240165.1] [locati... gi\|213425638 - gi\|213425638\|ref\|ZP_03358388.1\| branched-chain amino acid aminotransferase [Salmonella enterica subs... gi\|194713775, gi... - gi\|194738273\|ref\|YP_002116837.1\| branched-chain amino acid aminotransferase [Salmonella enterica sub... gi\|168238357, gi... - gi\|197288739\|gb\|EDY28114.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. e... gi\|167994598, gi... - gi\|205327552\|gb\|EDZ14316.1\| branched-chain amino acid aminotransferase [Salmonella enterica subsp. e...	3.0E-92	[2..298]	[5..307]
gi\|146295873, gi... - gi\|82499813\|ref\|ZP_00885249.1\| Branched-chain amino acid aminotransferase I [Caldicellulosiruptor sa...	4.0E-92	[1..293]	[1..293]
gi\|77968176, gi\|... - gi\|78067431\|ref\|YP_370200.1\| branched-chain amino acid aminotransferase [Burkholderia sp. 383], gi\|7...	9.0E-92	[3..298]	[7..307]
gi\|74019300, gi\|... - gi\|74019300\|ref\|ZP_00689917.1\| Branched-chain amino acid aminotransferase I [Burkholderia ambifaria ... gi\|171994109, gi... - gi\|172061592\|ref\|YP_001809244.1\| branched-chain amino acid aminotransferase [Burkholderia ambifaria ... gi\|170137491, gi... - gi\|170697604\|ref\|ZP_02888693.1\| branched-chain amino acid aminotransferase [Burkholderia ambifaria I...	1.0E-91	[3..298]	[7..307]
gi\|30064933, gi\|... - gi\|30064933\|ref\|NP_839104.1\| branched-chain amino acid aminotransferase [Shigella flexneri 2a str. 2... gi\|229774929 - gi\|229774929\|ref\|YP_691058.2\| branched-chain amino acid aminotransferase [Shigella flexneri 5 str. 8... gi\|24115065, gi\|... - gi\|24115065\|ref\|NP_709575.1\| branched-chain amino acid aminotransferase [Shigella flexneri 2a str. 3...	1.0E-91	[2..298]	[5..307]
gi\|96710 - gi\|96710\|pir\|\|A34082 branched-chain-amino-acid transaminase (EC 2.6.1.42) - Salmonella typhimurium	1.0E-91	[2..298]	[4..306]
gi\|67530061, gi\|... - gi\|67548622\|ref\|ZP_00426507.1\| Branched-chain amino acid aminotransferase I [Burkholderia vietnamien...	1.0E-91	[3..298]	[7..307]
gi\|84355609 - gi\|84355609\|ref\|ZP_00980486.1\| COG0115: Branched-chain amino acid aminotransferase/4-amino-4-deoxych...	2.0E-91	[3..298]	[5..305]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNQYIYMNG EFVEKEKAVV SVYDHGFLYG DGVFEGIRSY GGNVFCLKEH VKRLYESAKS  60
   61 ILLTIPLTVD EMEEAVLQTL QKNEYADAYI RLIVSRGKGD LGLDPRSCVK PSVIIIAEQL 120
  121 KLFPQEFYDN GLSVVSVASR RNTPDALDPR IKSMNYLNNV LVKIEAAQAG VLEALMLNQQ 180
  181 GYVCEGSGDN VFVVKDGKVL TPPSYLGALE GITRNSVIEL CERLSIPCEE RPFTRHDVYV 240
  241 ADEVFLTGTA AELIPVVKVD SREIGDGKPG SVTKQLTEEF KKLTRERGVR VPGLAESLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.0
Match:	1a3gA
Description:	Branched-chain aminoacid aminotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-alanine:2-oxoglutarate aminotransferase activity	5.92270586163256	bayes_pls_golite062009
branched-chain-amino-acid transaminase activity	4.40524391258229	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	2.8158800446404	bayes_pls_golite062009
transaminase activity	2.8068647476058	bayes_pls_golite062009
catalytic activity	2.79277628243817	bayes_pls_golite062009
4-amino-4-deoxychorismate lyase activity	2.07400020867227	bayes_pls_golite062009
L-alanine:2-oxoglutarate aminotransferase activity	1.88117354921159	bayes_pls_golite062009
alanine-oxo-acid transaminase activity	1.88117354921159	bayes_pls_golite062009
transferase activity	1.36772068349993	bayes_pls_golite062009
oxo-acid-lyase activity	0.20929492402161	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: