YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256552, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256552, gi|....

Description	E-value	Query Range	Subject Range
DEOC_CARHZ - Deoxyribose-phosphate aldolase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 ...	3.0E-53	[2..218]	[6..225]
gi\|56421034, gi\|... - gi\|56421034\|ref\|YP_148352.1\| deoxyribose-phosphate aldolase [Geobacillus kaustophilus HTA426], gi\|56...	8.0E-53	[1..215]	[53..267]
gi\|229166789, gi... - gi\|229166789\|ref\|ZP_04294539.1\| Deoxyribose-phosphate aldolase [Bacillus cereus AH621], gi\|228616786... DEOC_BACWK - Deoxyribose-phosphate aldolase OS=Bacillus weihenstephanensis (strain KBAB4) GN=deoC PE=3 SV=1 gi\|229136334, gi... - gi\|229136334\|ref\|ZP_04265078.1\| Deoxyribose-phosphate aldolase [Bacillus cereus BDRD-ST196], gi\|2286... gi\|229011220, gi... - gi\|229011220\|ref\|ZP_04168413.1\| Deoxyribose-phosphate aldolase [Bacillus mycoides DSM 2048], gi\|2287...	2.0E-51	[1..223]	[1..223]
gi\|89084799, gi\|... - gi\|89100456\|ref\|ZP_01173318.1\| deoxyribose phosphate aldolase [Bacillus sp. NRRL B-14911], gi\|890847...	1.0E-50	[2..215]	[13..226]
DEOC_TREDE - Deoxyribose-phosphate aldolase OS=Treponema denticola GN=deoC PE=3 SV=1 DEOC_TREDE - Deoxyribose-phosphate aldolase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) G...	2.0E-50	[1..214]	[1..215]
DEOC_BACC1 - Deoxyribose-phosphate aldolase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=deoC PE=3 SV=1	2.0E-50	[1..223]	[1..223]
gi\|74492737, gi\|... - gi\|75759787\|ref\|ZP_00739865.1\| Deoxyribose-phosphate aldolase [Bacillus thuringiensis serovar israel...	2.0E-50	[1..223]	[4..226]
gi\|228627825, gi... - gi\|229155507\|ref\|ZP_04283615.1\| Deoxyribose-phosphate aldolase [Bacillus cereus ATCC 4342], gi\|22862... gi\|47552964, gi\|... - gi\|47570378\|ref\|ZP_00241020.1\| deoxyribose-phosphate aldolase [Bacillus cereus G9241], gi\|47552964\|g...	2.0E-50	[1..223]	[1..223]
DEOC_PYRKO - Probable deoxyribose-phosphate aldolase OS=Pyrococcus kodakaraensis GN=deoC PE=3 SV=1 DEOC_THEKO - Deoxyribose-phosphate aldolase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)...	3.0E-50	[2..214]	[5..220]
DEOC_CALS8 - Deoxyribose-phosphate aldolase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903...	3.0E-50	[2..214]	[5..219]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIAKLIDHT ILKANTTKED VMKVIEEAKE YKFASVCINP TWVKLAAEEL AGHDVDVCTV  60
   61 IGFPLGASTT ETKAFETKDA IAKGATEVDM VINVGALKDG DNELVEKDIY EVVQAAKGKA 120
  121 LVKVIIETCL LTDEEKVRAC ELSVKAGADF VKTSTGFSTG GATAEDIALM RKTVGPNVGV 180
  181 KASGGVRTRE DAEKMVAAGA SRVGASASVA IVLNDAKGAT DNY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.221849
Match:	1o0yA
Description:	Deoxyribose-phosphate aldolase DeoC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	3.04075198078553	bayes_pls_golite062009
deoxyribose-phosphate aldolase activity	2.53712494800381	bayes_pls_golite062009
transaldolase activity	0.657551083859431	bayes_pls_golite062009
lyase activity	0.437176828950096	bayes_pls_golite062009
aldehyde-lyase activity	0.41660515357045	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	0.270307871677629	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: