YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257429, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257429, gi|....

Description	E-value	Query Range	Subject Range
gi\|75764326, gi\|... - gi\|75764326\|ref\|ZP_00743856.1\| Carbohydrate binding domain protein [Bacillus thuringiensis serovar i...	5.0E-85	[1..221]	[1..221]
gi\|228655443, gi... - gi\|229128168\|ref\|ZP_04257150.1\| Chitin-binding domain 3 protein [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|228673263, gi... - gi\|229110277\|ref\|ZP_04239851.1\| Chitin-binding domain 3 protein [Bacillus cereus Rock1-15], gi\|22867... gi\|229080014, gi... - gi\|229080014\|ref\|ZP_04212545.1\| Chitin-binding domain 3 protein [Bacillus cereus Rock4-2], gi\|228703... gi\|229046525, gi... - gi\|229046525\|ref\|ZP_04192179.1\| Chitin-binding domain 3 protein [Bacillus cereus AH676], gi\|22872481... gi\|229145402, gi... - gi\|229145402\|ref\|ZP_04273790.1\| Chitin-binding domain 3 protein [Bacillus cereus BDRD-ST24], gi\|2286... gi\|228800565, gi... - gi\|228959056\|ref\|ZP_04120756.1\| Chitin-binding domain 3 protein [Bacillus thuringiensis serovar paki... gi\|228953159, gi... - gi\|228953159\|ref\|ZP_04115216.1\| Chitin-binding domain 3 protein [Bacillus thuringiensis serovar kurs... gi\|29896499, gi\|... - gi\|30020946\|ref\|NP_832577.1\| chitin binding protein [Bacillus cereus ATCC 14579], gi\|29896499\|gb\|AAP... gi\|206733278, gi... - gi\|206971893\|ref\|ZP_03232842.1\| putative chitin binding protein [Bacillus cereus AH1134], gi\|2067332... gi\|218231320, gi... - gi\|218231320\|ref\|YP_002367546.1\| putative chitin binding protein [Bacillus cereus B4264], gi\|2181592...	8.0E-85	[1..221]	[1..221]
gi\|42781912, gi\|... - gi\|42781912\|ref\|NP_979159.1\| chitin binding protein, putative [Bacillus cereus ATCC 10987], gi\|42737...	5.0E-84	[1..221]	[1..221]
gi\|47555619, gi\|... - gi\|47567642\|ref\|ZP_00238352.1\| chitin-binding protein, putative [Bacillus cereus G9241], gi\|47555619...	9.0E-84	[1..221]	[1..221]
gi\|251825714 - gi\|251825714\|gb\|ACT20916.1\| Cbp24 [Bacillus thuringiensis serovar konkukian] gi\|49479108, gi\|... - gi\|49479108\|ref\|YP_036911.1\| chitin-binding protein [Bacillus thuringiensis serovar konkukian str. 9...	2.0E-83	[1..221]	[1..221]
gi\|163862770, gi... - gi\|89208266\|ref\|ZP_01186781.1\| Chitin-binding, domain 3 [Bacillus weihenstephanensis KBAB4], gi\|8915...	2.0E-82	[1..221]	[1..221]
gi\|24372657, gi\|... - gi\|24372657\|ref\|NP_716699.1\| N-acetylglucosamine-binding protein A [Shewanella oneidensis MR-1], gi\|... SO1072 - chitin-binding protein putative	9.0E-72	[10..220]	[19..231]
GBPA_SHEON - GlcNAc-binding protein A OS=Shewanella oneidensis (strain MR-1) GN=gbpA PE=3 SV=2 gi\|91206705 - gi\|91206705\|sp\|Q8EHY2.2\|GBPA_SHEON RecName: Full=GlcNAc-binding protein A; Flags: Precursor	1.0E-71	[10..220]	[3..215]
gi\|78504852, gi\|... - gi\|78687426\|ref\|ZP_00852175.1\| chitin-binding protein, putative [Shewanella sp. ANA-3], gi\|78504852\|...	2.0E-71	[5..220]	[14..231]
gi\|82495148, gi\|... - gi\|82495148\|ref\|ZP_00880726.1\| chitin-binding protein, putative [Shewanella sp. MR-4], gi\|82406984\|g...	3.0E-70	[11..220]	[20..231]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKGLQKVK KVILSGGILL TGLLTFGFSE KASAHGYVES PASRSYLCKQ GVNVNCGPIQ  60
   61 YEPQSVEGIG GFPQLGPSDG QIAGAGHFPA LDVQTVDRWK KVTLNGGTNT FKWKLTAPHS 120
  121 TKEWKYYITK KDWNPNKPLS RSDLDLVPFY VKNDGGARPG TSVTHEANVP TDRNGYHLIL 180
  181 AVWEIADTGN AFYQVIDVNL VNNGLASNNV LNHVVQVPTL F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.522879
Match:	2bemA
Description:	Crystal structure of the Serratia marcescens chitin-binding protein CBP21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chitin binding	1.26897809601882	bayes_pls_golite062009
binding	0.621971309710946	bayes_pls_golite062009
protein binding	0.0404451259966639	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: