YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258179, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	807 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258179, gi|....

Description	E-value	Query Range	Subject Range
gi\|153839549, gi... - gi\|153839549\|ref\|ZP_01992216.1\| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810], gi\|149746930... gi\|28806924, gi\|... - gi\|28898706\|ref\|NP_798311.1\| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633], gi\|288069... gi\|28806924 - gi\|28806924\|dbj\|BAC60195.1\| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633]	0.0	[4..804]	[6..839]
gi\|90581243, gi\|... - gi\|90581243\|ref\|ZP_01237041.1\| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14], g...	0.0	[4..807]	[6..853]
gi\|4886573, gi\|1... - gi\|4886573\|dbj\|BAA77788.1\| DNA gyrase [Vibrio parahaemolyticus], pir\|\|T43767 DNA topoisomerase (ATP-...	0.0	[4..804]	[6..839]
gi\|89074076, gi\|... - gi\|89074076\|ref\|ZP_01160577.1\| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp. SKA3...	0.0	[4..807]	[6..853]
gi\|83724218, gi\|... - gi\|83749097\|ref\|ZP_00946102.1\| DNA gyrase subunit A [Ralstonia solanacearum UW551], gi\|83724218\|gb\|E...	0.0	[4..807]	[137..991]
gi\|221086918, gi... - gi\|221086918\|ref\|ZP_03556458.1\| DNA gyrase, A subunit [Geobacillus sp. Y412MC61], gi\|220708971\|gb\|EE... gi\|229328386, gi... - gi\|229500723\|ref\|ZP_04394368.1\| DNA gyrase, A subunit [Geobacillus sp. Y412MC52], gi\|229328386\|gb\|EE... gi\|56418541, gi\|... - gi\|56418541\|ref\|YP_145859.1\| DNA gyrase subunit A [Geobacillus kaustophilus HTA426], gi\|56378383\|dbj...	0.0	[2..807]	[5..814]
gi\|29893824, gi\|... - gi\|30018284\|ref\|NP_829915.1\| DNA gyrase subunit A [Bacillus cereus ATCC 14579], gi\|29893824\|gb\|AAP07...	0.0	[2..806]	[7..811]
gi\|167510310, gi... - gi\|167641756\|ref\|ZP_02399999.1\| DNA gyrase, A subunit [Bacillus anthracis str. A0193], gi\|167510310\|... gi\|164711248, gi... - gi\|165873036\|ref\|ZP_02217657.1\| DNA gyrase, A subunit [Bacillus anthracis str. A0488], gi\|164711248\|... gi\|170127597, gi... - gi\|170707601\|ref\|ZP_02898054.1\| DNA gyrase, A subunit [Bacillus anthracis str. A0389], gi\|170127597\|... gi\|170666579, gi... - gi\|170689477\|ref\|ZP_02880667.1\| DNA gyrase, A subunit [Bacillus anthracis str. A0465], gi\|170666579\|... gi\|42779087, gi\|... - gi\|42779087\|ref\|NP_976334.1\| DNA gyrase subunit A [Bacillus cereus ATCC 10987], gi\|42735002\|gb\|AAS38... gi\|190569281, gi... - gi\|190569281\|ref\|ZP_03022175.1\| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I], gi\|190559... gi\|30253522, gi\|... - gi\|30260201\|ref\|NP_842578.1\| DNA gyrase subunit A [Bacillus anthracis str. Ames], gi\|30253522\|gb\|AAP... gi\|172080199, gi... - gi\|177655272\|ref\|ZP_02936826.1\| DNA gyrase, A subunit [Bacillus anthracis str. A0174], gi\|172080199\|... gi\|65317474, gi\|... - gi\|65317474\|ref\|ZP_00390433.1\| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... gi\|196023691, gi... - gi\|196045484\|ref\|ZP_03112715.1\| DNA gyrase, A subunit [Bacillus cereus 03BB108], gi\|196023691\|gb\|EDX... gi\|196041934, gi... - gi\|196041934\|ref\|ZP_03109221.1\| DNA gyrase, A subunit [Bacillus cereus NVH0597-99], gi\|196027189\|gb\|... gi\|227812684, gi... - gi\|227812684\|ref\|YP_002812693.1\| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684], gi\|2270064... gi\|228918106, gi... - gi\|228918106\|ref\|ZP_04081634.1\| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis BGSC... gi\|228595791, gi... - gi\|229187723\|ref\|ZP_04314859.1\| DNA gyrase subunit A [Bacillus cereus BGSC 6E1], gi\|228595791\|gb\|EEK... gi\|228583777, gi... - gi\|229199682\|ref\|ZP_04326325.1\| DNA gyrase subunit A [Bacillus cereus m1293], gi\|228583777\|gb\|EEK419... gi\|229604222, gi... - gi\|229604222\|ref\|YP_002864663.1\| DNA gyrase, A subunit [Bacillus anthracis str. A0248], gi\|229268630... gi\|254687065 - gi\|254687065\|ref\|ZP_05150923.1\| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066] gi\|254724152 - gi\|254724152\|ref\|ZP_05185937.1\| DNA gyrase subunit A [Bacillus anthracis str. A1055] gi\|254735168 - gi\|254735168\|ref\|ZP_05192878.1\| DNA gyrase subunit A [Bacillus anthracis str. Western North America ... gi\|49476687, gi\|... - gi\|49476687\|ref\|YP_034366.1\| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str. 97-... gi\|254755968 - gi\|254755968\|ref\|ZP_05208000.1\| DNA gyrase subunit A [Bacillus anthracis str. Vollum] gi\|49176972, gi\|... - gi\|49183045\|ref\|YP_026297.1\| DNA gyrase subunit A [Bacillus anthracis str. Sterne], gi\|49176972\|gb\|A... gi\|254761352 - gi\|254761352\|ref\|ZP_05213374.1\| DNA gyrase subunit A [Bacillus anthracis str. Australia 94] gi\|47525260, gi\|... - gi\|47525260\|ref\|YP_016609.1\| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor'], gi\|4750...	0.0	[2..807]	[6..811]
gi\|51978672, gi\|... - gi\|52145203\|ref\|YP_081625.1\| DNA gyrase subunit A [Bacillus cereus E33L], gi\|51978672\|gb\|AAU20222.1\|...	0.0	[2..807]	[6..811]
gi\|2731385 - gi\|2731385\|gb\|AAB95117.1\| DNA gyrase [Serratia marcescens]	0.0	[4..806]	[6..842]

Back

Predicted Domain #1

Region A:
Residues: [1-494]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAEKFHDLP LEDVLGDRFA RYSKYIIQDR ALPDARDGLK PVQRRILYSM YVEGNVHDKA  60
   61 FRKSAKTVGN VIGNYHPHGD SSVYEAMVRL SQTWKVRNVL VEMHGNNGSV DGDPAAAMRY 120
  121 TEARLSPIAS ELLRDLDKET VEFVSNFDDT SEEPVVLPAA FPNLLVNGST GISAGYATEI 180
  181 PPHHLGEVID ATMMRIDKPN STVDDLLTVM KGPDFPTGGI IQGIDGIKKA YETGKGKIII 240
  241 RGKAEVETVR GGKQQIVITE IPYEVNKANL VKKMDELRLD KKLDGIAEVR DETDRTGLRI 300
  301 VVELKKEANS EGILNYLYKN TDLQIPYNFN MVAINNRRPT LMTLPKILDA YIGHQKEVVT 360
  361 RRSQYELRKA ENRQHIVEGL KKALSILDQV IETIRASKDK RNAKDNLSAK FGFTEAQAEA 420
  421 IVSLQLYRLT NTDITALQQE ADELNKKIIE LQAILQSEKR LLQVIKTDLK RVKKTYSDDR 480
  481 RAIIEDQIEE IKID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	171.0
Match:	2inrA
Description:	No description for 2inrA was found.

Predicted Domain #2

Region A:
Residues: [495-807]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEVMIPQEDV IVTVTKEGYV KRTGWRSHNA SNGKDFGMKE GDILLERFDT NTTETVLLFT  60
   61 NKGNYIYLPV YEMPDIRWKD LGQHVANIVS LDRDETIIWA TVVPNFEEEK RFIVFVTKNG 120
  121 MIKKTELNQY KVQRYSRAFV AVNLKKDDEV VDIFATDGTS DIVLATHGAY ALIFHEDEVS 180
  181 PVGVRAAGVK AINLKEDDYV ASGKPLNADK DQLILVTQRG AVKRLKASEI EKSTRAKRGL 240
  241 VIFKELKRNP YRIVGIEIVR DDELVYMKTE KHIVEEIDPK AYRNKDRYSN GSLVLDVNDT 300
  301 GEVIETWTKK RPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.69897
Match:	1wp5A
Description:	Crystal structure of the C-terminal domain of DNA topoisomerase IV
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits