YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258342, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	444 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258342, gi|....

Description	E-value	Query Range	Subject Range
gi\|216396, gi\|226395 - gi\|226395\|prf\|\|1510222A Gln synthetase, gi\|216396\|dbj\|BAA00730.1\| glutamine synthetase [Bacillus sub...	0.0	[1..444]	[1..444]
GLNA_BACSU - Glutamine synthetase OS=Bacillus subtilis GN=glnA PE=1 SV=3 gi\|221323144 - gi\|221323144\|ref\|ZP_03604438.1\| glutamine synthetase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221318871 - gi\|221318871\|ref\|ZP_03600165.1\| glutamine synthetase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221313948 - gi\|221313948\|ref\|ZP_03595753.1\| glutamine synthetase [Bacillus subtilis subsp. subtilis str. NCIB 36... GLNA_BACSU - Glutamine synthetase OS=Bacillus subtilis (strain 168) GN=glnA PE=1 SV=3	0.0	[1..444]	[1..444]
gi\|89202155, gi\|... - gi\|89202155\|ref\|ZP_01180884.1\| Glutamine synthetase type I [Bacillus cereus subsp. cytotoxis NVH 391...	0.0	[1..444]	[1..444]
gi\|42782781, gi\|... - gi\|42782781\|ref\|NP_980028.1\| glutamine synthetase, type I [Bacillus cereus ATCC 10987], gi\|42738708\|...	0.0	[1..444]	[1..444]
gi\|47554099, gi\|... - gi\|47569225\|ref\|ZP_00239911.1\| glutamine synthetase, type I [Bacillus cereus G9241], gi\|47554099\|gb\|...	0.0	[1..444]	[1..444]
gi\|52003582, gi\|... - gi\|52785749\|ref\|YP_091578.1\| hypothetical protein BLi01993 [Bacillus licheniformis ATCC 14580], gi\|5...	0.0	[1..444]	[1..444]
gi\|56379704, gi\|... - gi\|56419862\|ref\|YP_147180.1\| glutamine synthetase (glutamate-ammonia ligase) [Geobacillus kaustophil...	0.0	[1..444]	[1..444]
GLNA_BACCE - Glutamine synthetase OS=Bacillus cereus GN=glnA PE=1 SV=3	0.0	[1..444]	[1..444]
gi\|229012875, gi... - gi\|229012875\|ref\|ZP_04170042.1\| Glutamine synthetase [Bacillus mycoides DSM 2048], gi\|228748419\|gb\|E... gi\|228649117, gi... - gi\|229134496\|ref\|ZP_04263309.1\| Glutamine synthetase [Bacillus cereus BDRD-ST196], gi\|228649117\|gb\|E... gi\|229065858, gi... - gi\|229065858\|ref\|ZP_04201055.1\| Glutamine synthetase [Bacillus cereus AH603], gi\|228715396\|gb\|EEL672... gi\|89153937, gi\|... - gi\|89208144\|ref\|ZP_01186664.1\| Glutamine synthetase type I [Bacillus weihenstephanensis KBAB4], gi\|8... gi\|229168436, gi... - gi\|229168436\|ref\|ZP_04296160.1\| Glutamine synthetase [Bacillus cereus AH621], gi\|228615080\|gb\|EEK721...	0.0	[1..444]	[1..444]
gi\|89084286, gi\|... - gi\|89100990\|ref\|ZP_01173834.1\| GlnA [Bacillus sp. NRRL B-14911], gi\|89084286\|gb\|EAR63443.1\| GlnA [Ba...	0.0	[1..444]	[1..444]

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Predicted Domain #1

Region A:
Residues: [1-444]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARYTKEDIF RLAKEENVKY IRLQFTDLLG VIKNVEIPVS QLTKALDNKM MFDGSSIEGF  60
   61 VRIEESDMYL YPDLDTWVIF PWTAEKGKVA RLICDIYNAD GTPFEGDPRN NLKRVLKEME 120
  121 ALGFSDFNLG PEPEFFLFKV DEKGNPTLEL NDNGGYFDLA PMDLGENCRR DIVLELEEMG 180
  181 FEIEASHHEV APGQHEIDFK YANAIRSCDD IQTFKLVVKT IARKHGLHAT FMPKPLYGVN 240
  241 GSGMHCNLSL FKNGENVFFD QNGDLQLSDD ARHFIAGILK HAPAFTAVAN PTVNSYKRLV 300
  301 PGYEAPCYVA WSAQNRSPLV RIPASRGIST RVEVRSVDPA ANPYLVMATL LAAGLDGIKN 360
  361 KLTPPAAVDR NIYVMTKEER EEAGIVDLPA TLAQALVTLQ SNEVISNALG DHLLEHFIEA 420
  421 KEIEWDIFRT QVHQWERDQY MSLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	137.0
Match:	1f1hA
Description:	Glutamine synthetase, N-terminal domain; Glutamine synthetase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ammonia ligase activity	6.27241182807427	bayes_pls_golite062009
acid-ammonia (or amide) ligase activity	5.91942691148686	bayes_pls_golite062009
ligase activity	1.27889290664771	bayes_pls_golite062009
catalytic activity	1.08973967683802	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.0373860162850559	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: