YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258375, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258375, gi|....

Description	E-value	Query Range	Subject Range
gi\|29895202, gi\|... - gi\|30019658\|ref\|NP_831289.1\| DNA-binding protein HU [Bacillus cereus ATCC 14579], gi\|29895202\|gb\|AAP... gi\|74488445, gi\|... - gi\|75764066\|ref\|ZP_00743668.1\| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis AT...	2.0E-27	[1..90]	[25..114]
gi\|113724087, gi... - gi\|113875483\|ref\|ZP_01415608.1\| nucleoid DNA-binding protein-like [Sinorhizobium medicae WSM419], gi...	3.0E-27	[1..89]	[101..189]
gi\|228957885, gi... - gi\|228957885\|ref\|ZP_04119625.1\| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str... gi\|228951986, gi... - gi\|228951986\|ref\|ZP_04114083.1\| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki str.... gi\|228775082, gi... - gi\|228984688\|ref\|ZP_04144861.1\| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis ... gi\|228781230, gi... - gi\|228978213\|ref\|ZP_04138590.1\| DNA-binding protein HU [Bacillus thuringiensis Bt407], gi\|228781230\|... gi\|229078792, gi... - gi\|229078792\|ref\|ZP_04211345.1\| DNA-binding protein HU [Bacillus cereus Rock4-2], gi\|228704474\|gb\|EE... gi\|229043354, gi... - gi\|229043354\|ref\|ZP_04191072.1\| DNA-binding protein HU [Bacillus cereus AH676], gi\|228726002\|gb\|EEL7... gi\|228681114, gi... - gi\|229102213\|ref\|ZP_04232922.1\| DNA-binding protein HU [Bacillus cereus Rock3-28], gi\|228681114\|gb\|E... gi\|228687061, gi... - gi\|229096101\|ref\|ZP_04227074.1\| DNA-binding protein HU [Bacillus cereus Rock3-29], gi\|228687061\|gb\|E... gi\|229115057, gi... - gi\|229115057\|ref\|ZP_04244467.1\| DNA-binding protein HU [Bacillus cereus Rock1-3], gi\|228668197\|gb\|EE... gi\|229109065, gi... - gi\|229109065\|ref\|ZP_04238665.1\| DNA-binding protein HU [Bacillus cereus Rock1-15], gi\|228674343\|gb\|E... gi\|229149807, gi... - gi\|229149807\|ref\|ZP_04278036.1\| DNA-binding protein HU [Bacillus cereus m1550], gi\|228633671\|gb\|EEK9... gi\|228639216, gi... - gi\|229144208\|ref\|ZP_04272622.1\| DNA-binding protein HU [Bacillus cereus BDRD-ST24], gi\|228639216\|gb\|... gi\|229183804, gi... - gi\|229183804\|ref\|ZP_04311021.1\| DNA-binding protein HU [Bacillus cereus BGSC 6E1], gi\|228599653\|gb\|E... gi\|229178017, gi... - gi\|229178017\|ref\|ZP_04305389.1\| DNA-binding protein HU [Bacillus cereus 172560W], gi\|228605505\|gb\|EE... gi\|65318875 - gi\|65318875\|ref\|ZP_00391834.1\| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus anthracis s... gi\|228820962, gi... - gi\|228938721\|ref\|ZP_04101325.1\| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC...	5.0E-27	[1..90]	[15..104]
gi\|31789462 - gi\|31789462\|gb\|AAP58576.1\| putative DNA-binding protein [uncultured Acidobacteria bacterium]	2.0E-26	[1..89]	[1..89]
DBH1_BACHD - DNA-binding protein HU-1 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... DBH1_BACHD - DNA-binding protein HU-1 OS=Bacillus halodurans GN=hup1 PE=3 SV=1	2.0E-26	[1..89]	[1..89]
gi\|207999 - gi\|207999\|gb\|AAA72912.1\| HBsu protein	3.0E-26	[1..89]	[7..95]
DBH_GEOSE - DNA-binding protein HU OS=Geobacillus stearothermophilus GN=hup PE=1 SV=1 gi\|220708838, gi... - gi\|221087188\|ref\|ZP_03556727.1\| histone family protein DNA-binding protein [Geobacillus sp. Y412MC61... gi\|196211551, gi... - gi\|196248675\|ref\|ZP_03147375.1\| histone family protein DNA-binding protein [Geobacillus sp. G11MC16]... gi\|56420750, gi\|... - gi\|56420750\|ref\|YP_148068.1\| DNA-binding protein HU (DNA-binding protein II) [Geobacillus kaustophil... gi\|134267306, gi... - gi\|138895793\|ref\|YP_001126246.1\| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2], gi... DBH_BACCL - DNA-binding protein HU OS=Bacillus caldolyticus GN=hup PE=1 SV=1 DBH_BACCA - DNA-binding protein HU OS=Bacillus caldotenax GN=hup PE=3 SV=1	6.0E-26	[1..90]	[1..90]
DBH1_BACSU - DNA-binding protein HU 1 OS=Bacillus subtilis GN=hupA PE=1 SV=2 gi\|221314518 - gi\|221314518\|ref\|ZP_03596323.1\| hypothetical protein BsubsN3_12437 [Bacillus subtilis subsp. subtili... gi\|221319440 - gi\|221319440\|ref\|ZP_03600734.1\| hypothetical protein BsubsJ_12363 [Bacillus subtilis subsp. subtilis... gi\|221323716 - gi\|221323716\|ref\|ZP_03605010.1\| hypothetical protein BsubsS_12492 [Bacillus subtilis subsp. subtilis... gi\|154352378, gi... - gi\|154686527\|ref\|YP_001421688.1\| hypothetical protein RBAM_020950 [Bacillus amyloliquefaciens FZB42]... DBH1_BACSU - DNA-binding protein HU 1 OS=Bacillus subtilis (strain 168) GN=hupA PE=1 SV=2	7.0E-26	[1..89]	[1..89]
gi\|182631141, gi... - gi\|182681031\|ref\|YP_001829191.1\| histone family protein DNA-binding protein [Xylella fastidiosa M23]... DBH_XYLFT - DNA-binding protein HU OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=hup PE=3 SV=1	1.0E-25	[1..90]	[1..90]
gi\|52786158, gi\|... - gi\|52786158\|ref\|YP_091987.1\| Hbs [Bacillus licheniformis ATCC 14580], gi\|52348660\|gb\|AAU41294.1\| Hbs...	1.0E-25	[1..89]	[1..89]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTELIKNV AQNAEISQKE ATVVVQTVVE SITNTLAAGE KVQLIGFGTF EVRERAARTG  60
   61 RNPQTGEEMQ IAASKVPAFK AGKELKEAVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	1hueA
Description:	HU protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA binding	5.25387001942839	bayes_pls_golite062009
nucleic acid binding	5.15205953864352	bayes_pls_golite062009
binding	3.99545980559645	bayes_pls_golite062009
transcription regulator activity	1.74311685689448	bayes_pls_golite062009
transcription activator activity	0.38454381783388	bayes_pls_golite062009
protein binding	0.262917207132993	bayes_pls_golite062009
transcription repressor activity	0.176747764275359	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: