YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264221, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	372 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264221, gi|....

Description	E-value	Query Range	Subject Range
gi\|52004145, gi\|... - gi\|52786309\|ref\|YP_092138.1\| YqjE [Bacillus licheniformis ATCC 14580], gi\|52348811\|gb\|AAU41445.1\| Yq...	2.0E-67	[2..371]	[1..369]
gi\|25489889 - pir\|\|E83833 hypothetical protein BH1469 [imported] - Bacillus halodurans (strain C-125) gi\|10174086, gi\|... - gi\|15614032\|ref\|NP_242335.1\| hypothetical protein BH1469 [Bacillus halodurans C-125], gi\|10174086\|db...	4.0E-66	[1..369]	[1..368]
gi\|2634825, gi\|1... - gi\|2634825\|emb\|CAB14322.1\| yqjE [Bacillus subtilis subsp. subtilis str. 168], gi\|16079447\|ref\|NP_390... YQJE_BACSU - Uncharacterized protein yqjE OS=Bacillus subtilis GN=yqjE PE=3 SV=1	8.0E-65	[1..372]	[1..371]
gi\|47568208, gi\|... - gi\|47568208\|ref\|ZP_00238912.1\| peptidase T-like protein [Bacillus cereus G9241], gi\|47555198\|gb\|EAL1... gi\|228625685, gi... - gi\|229157728\|ref\|ZP_04285803.1\| hypothetical protein bcere0010_39090 [Bacillus cereus ATCC 4342], gi...	3.0E-64	[1..372]	[1..372]
gi\|42783262, gi\|... - gi\|42783262\|ref\|NP_980509.1\| peptidase T [Bacillus cereus ATCC 10987], gi\|42739190\|gb\|AAS43117.1\| pe...	5.0E-64	[1..372]	[1..372]
gi\|65321537, gi\|... - gi\|65321537\|ref\|ZP_00394496.1\| COG2195: Di- and tripeptidases [Bacillus anthracis str. A2012], ref\|N...	8.0E-64	[1..372]	[1..372]
gi\|229081406, gi... - gi\|229081406\|ref\|ZP_04213908.1\| hypothetical protein bcere0023_40400 [Bacillus cereus Rock4-2], gi\|2... gi\|228711449, gi... - gi\|229071654\|ref\|ZP_04204871.1\| hypothetical protein bcere0025_38220 [Bacillus cereus F65185], gi\|22... gi\|229047841, gi... - gi\|229047841\|ref\|ZP_04193420.1\| hypothetical protein bcere0027_38180 [Bacillus cereus AH676], gi\|228... gi\|228980832, gi... - gi\|228980832\|ref\|ZP_04141137.1\| hypothetical protein bthur0002_39970 [Bacillus thuringiensis Bt407],... gi\|229152349, gi... - gi\|229152349\|ref\|ZP_04280541.1\| hypothetical protein bcere0011_38870 [Bacillus cereus m1550], gi\|228... gi\|228636741, gi... - gi\|229146721\|ref\|ZP_04275087.1\| hypothetical protein bcere0012_38620 [Bacillus cereus BDRD-ST24], gi... gi\|229129427, gi... - gi\|229129427\|ref\|ZP_04258398.1\| hypothetical protein bcere0015_38700 [Bacillus cereus BDRD-Cer4], gi... gi\|228672003, gi... - gi\|229111621\|ref\|ZP_04241172.1\| hypothetical protein bcere0018_38660 [Bacillus cereus Rock1-15], gi\|... gi\|229192359, gi... - gi\|229192359\|ref\|ZP_04319323.1\| hypothetical protein bcere0002_40120 [Bacillus cereus ATCC 10876], g... gi\|229180427, gi... - gi\|229180427\|ref\|ZP_04307770.1\| hypothetical protein bcere0005_37720 [Bacillus cereus 172560W], gi\|2... gi\|29897784, gi\|... - gi\|30022227\|ref\|NP_833858.1\| peptidase T [Bacillus cereus ATCC 14579], gi\|29897784\|gb\|AAP11059.1\| Pe... gi\|218899310, gi... - gi\|218899310\|ref\|YP_002447721.1\| peptidase, M20/M25/M40 family [Bacillus cereus G9842], gi\|218542834... gi\|206733798, gi... - gi\|206971026\|ref\|ZP_03231977.1\| peptidase, M20/M25/M40 family [Bacillus cereus AH1134], gi\|206733798... gi\|228941309, gi... - gi\|228941309\|ref\|ZP_04103862.1\| hypothetical protein bthur0008_39480 [Bacillus thuringiensis serovar... gi\|228974241, gi... - gi\|228974241\|ref\|ZP_04134811.1\| hypothetical protein bthur0003_39950 [Bacillus thuringiensis serovar... gi\|228792559, gi... - gi\|228967190\|ref\|ZP_04128226.1\| hypothetical protein bthur0004_39940 [Bacillus thuringiensis serovar... gi\|228960415, gi... - gi\|228960415\|ref\|ZP_04122067.1\| hypothetical protein bthur0005_38820 [Bacillus thuringiensis serovar... gi\|228805090, gi... - gi\|228954433\|ref\|ZP_04116458.1\| hypothetical protein bthur0006_38030 [Bacillus thuringiensis serovar...	9.0E-64	[1..372]	[1..372]
gi\|228902660, gi... - gi\|228902660\|ref\|ZP_04066810.1\| hypothetical protein bthur0014_38350 [Bacillus thuringiensis IBL 422... gi\|74490546, gi\|... - gi\|75761966\|ref\|ZP_00741885.1\| Tripeptidase T [Bacillus thuringiensis serovar israelensis ATCC 35646...	1.0E-63	[1..372]	[1..372]
gi\|152025304, gi... - gi\|89200786\|ref\|ZP_01179536.1\| Peptidase M20B, peptidase T [Bacillus cereus subsp. cytotoxis NVH 391...	1.0E-63	[1..372]	[1..372]
gi\|56909761, gi\|... - gi\|56963518\|ref\|YP_175249.1\| tripeptidase [Bacillus clausii KSM-K16], gi\|56909761\|dbj\|BAD64288.1\| tr...	2.0E-63	[4..369]	[2..367]

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Predicted Domain #1

Region A:
Residues: [1-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINQERLVNE FMELVQVDSE TKFEAEICKV LTKKFTDLGV EVFEDDTMAV TGHGAGNLIC  60
   61 TLPATKDGVD TIYFTSHMDT VVPGNGIKPS IKDGYIVSDG TTILGADDKA GLASMFEAIR 120
  121 VLKEKNIPHG TIEFIITVGE ESGLVGAKAL DRERITAKYG YALDSDGKVG EIVVAAPTQA 180
  181 KVNAIIRGKT AHAGVAPEKG VSAITIAAKA IAKMPLGRID SETTANIGRF EGGTQTNIVC 240
  241 DHVQIFAEAR SLINEKMEVQ VAKMKEAFET TAKEMGGQAD VEVKVMYPGF KFADGDHVVE 300
  301 VAKRAAEKIG RTPSLHQSGG GSDANVIAGH GIPTVNLAVG YEEIHTTNEK IPVEELAKTA 360
  361 ELVVAIIEEV AK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1vixA
Description:	Crystal structure of a putative peptidase T
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	3.17104798571343	bayes_pls_golite062009
peptidase activity	2.99879418448481	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.36949934818383	bayes_pls_golite062009
catalytic activity	2.00064748759729	bayes_pls_golite062009
exopeptidase activity	0.960517137038552	bayes_pls_golite062009
binding	0.456088952797852	bayes_pls_golite062009
carboxypeptidase activity	0.389857234977383	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: