YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264257, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264257, gi|....

Description	E-value	Query Range	Subject Range
NUSB_BACCN - N utilization substance protein B homolog OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 3...	2.0E-35	[1..130]	[1..130]
NUSB_BACC1 - N utilization substance protein B homolog OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=nusB P...	3.0E-34	[1..130]	[1..130]
NUSB_BACC4 - N utilization substance protein B homolog OS=Bacillus cereus (strain B4264) GN=nusB PE=3 SV=1 gi\|206971091, gi... - gi\|206971091\|ref\|ZP_03232042.1\| N utilization substance protein B [Bacillus cereus AH1134], gi\|20673... NUSB_BACCR - N utilization substance protein B homolog OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 ... NUSB_BACC2 - N utilization substance protein B homolog OS=Bacillus cereus (strain G9842) GN=nusB PE=3 SV=1 gi\|228902700, gi... - gi\|228902700\|ref\|ZP_04066847.1\| N utilization substance protein B [Bacillus thuringiensis IBL 4222],... gi\|228967223, gi... - gi\|228967223\|ref\|ZP_04128259.1\| N utilization substance protein B [Bacillus thuringiensis serovar so... gi\|228785325, gi... - gi\|228974275\|ref\|ZP_04134844.1\| N utilization substance protein B [Bacillus thuringiensis serovar th... gi\|228910018, gi... - gi\|228910018\|ref\|ZP_04073838.1\| N utilization substance protein B [Bacillus thuringiensis IBL 200], ... gi\|228836708, gi... - gi\|228922937\|ref\|ZP_04086231.1\| N utilization substance protein B [Bacillus thuringiensis serovar hu...	4.0E-34	[1..130]	[1..130]
NUSB_BACWK - N utilization substance protein B homolog OS=Bacillus weihenstephanensis (strain KBAB4) GN=nusB PE=3... gi\|228717433, gi... - gi\|229061872\|ref\|ZP_04199202.1\| N utilization substance protein B [Bacillus cereus AH603], gi\|228717... gi\|229013400, gi... - gi\|229013400\|ref\|ZP_04170537.1\| N utilization substance protein B [Bacillus mycoides DSM 2048], gi\|2...	7.0E-34	[1..130]	[1..130]
gi\|49080752 - gi\|49080752\|gb\|AAT50054.1\| PA4052 [synthetic construct]	2.0E-33	[3..130]	[21..149]
gi\|94417012, gi\|... - gi\|94417012\|ref\|ZP_01296834.1\| hypothetical protein PaerP_01001208 [Pseudomonas aeruginosa PA7], gi\|...	4.0E-33	[3..130]	[21..149]
NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C /... gi\|46164642, gi\|... - gi\|46164642\|ref\|ZP_00205138.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa UCB... gi\|84325185, gi\|... - gi\|84325185\|ref\|ZP_00973225.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa 219... gi\|107103566 - gi\|107103566\|ref\|ZP_01367484.1\| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2] gi\|218889667, gi... - gi\|218889667\|ref\|YP_002438531.1\| transcription antitermination protein NusB [Pseudomonas aeruginosa ... NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa GN=nusB PE=3 SV=1	4.0E-33	[3..130]	[21..149]
gi\|126168872, gi... - gi\|84319131\|ref\|ZP_00967534.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa C37...	7.0E-33	[3..130]	[21..149]
NUSB_BACSU - N utilization substance protein B homolog OS=Bacillus subtilis GN=nusB PE=3 SV=1 gi\|16079488, gi\|... - gi\|2634866\|emb\|CAB14363.1\| nusB [Bacillus subtilis subsp. subtilis str. 168], gi\|16079488\|ref\|NP_390...	2.0E-32	[1..130]	[1..128]
NUSB_BACLD - N utilization substance protein B homolog OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JC...	3.0E-32	[1..130]	[1..128]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRTARERA MQALYQMDIT GELEPKVAVE NTLDEGEETN EFLESLVVGF VENKEVIDEA  60
   61 IRQNLKKWKL ERISIVDRSI LRVAVYEMKY MEEIPHNVTI NEAIEIAKTF GDEESRRFIN 120
  121 GVLSNIKDTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	1ey1A
Description:	Antitermination factor NusB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.08625510047476	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: