YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264362, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	373 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264362, gi|....

Description	E-value	Query Range	Subject Range
gi\|89150186, gi\|... - gi\|89201808\|ref\|ZP_01180543.1\| Sigma-70 region 1.2 [Bacillus cereus subsp. cytotoxis NVH 391-98], gi...	2.0E-84	[1..373]	[1..373]
gi\|89084822, gi\|... - gi\|89100479\|ref\|ZP_01173341.1\| RNA polymerase sigma factor [Bacillus sp. NRRL B-14911], gi\|89084822\|...	6.0E-83	[1..373]	[1..374]
gi\|30022370, gi\|... - gi\|30022370\|ref\|NP_834001.1\| RNA polymerase sigma factor RpoD [Bacillus cereus ATCC 14579], gi\|29897... gi\|218160218, gi... - gi\|218232261\|ref\|YP_002369099.1\| RNA polymerase sigma-43 factor [Bacillus cereus B4264], gi\|21816021... gi\|228631100, gi... - gi\|229152492\|ref\|ZP_04280684.1\| RNA polymerase sigma factor [Bacillus cereus m1550], gi\|228631100\|gb... gi\|228960557, gi... - gi\|228960557\|ref\|ZP_04122206.1\| RNA polymerase sigma factor [Bacillus thuringiensis serovar pakistan... gi\|228923044, gi... - gi\|228923044\|ref\|ZP_04086337.1\| RNA polymerase sigma factor [Bacillus thuringiensis serovar huazhong... gi\|229146877, gi... - gi\|229146877\|ref\|ZP_04275242.1\| RNA polymerase sigma factor [Bacillus cereus BDRD-ST24], gi\|22863670... gi\|229129569, gi... - gi\|229129569\|ref\|ZP_04258539.1\| RNA polymerase sigma factor [Bacillus cereus BDRD-Cer4], gi\|22865388... gi\|229111765, gi... - gi\|229111765\|ref\|ZP_04241313.1\| RNA polymerase sigma factor [Bacillus cereus Rock1-15], gi\|228671759... gi\|228723468, gi... - gi\|229048011\|ref\|ZP_04193587.1\| RNA polymerase sigma factor [Bacillus cereus AH676], gi\|228723468\|gb...	2.0E-82	[1..373]	[1..375]
gi\|228842748, gi... - gi\|228916924\|ref\|ZP_04080486.1\| RNA polymerase sigma factor [Bacillus thuringiensis serovar pulsiens... gi\|47555532, gi\|... - gi\|47567855\|ref\|ZP_00238563.1\| RNA polymerase sigma factor rpoD [Bacillus cereus G9241], gi\|47555532... gi\|217961783, gi... - gi\|217961783\|ref\|YP_002340353.1\| RNA polymerase sigma-43 factor [Bacillus cereus AH187], gi\|21706678... gi\|228642463, gi... - gi\|229141030\|ref\|ZP_04269573.1\| RNA polymerase sigma factor [Bacillus cereus BDRD-ST26], gi\|22864246... gi\|42739347, gi\|... - gi\|42783418\|ref\|NP_980665.1\| RNA polymerase sigma factor RpoD [Bacillus cereus ATCC 10987], gi\|42739... gi\|228772274, gi... - gi\|228987542\|ref\|ZP_04147661.1\| RNA polymerase sigma factor [Bacillus thuringiensis serovar tochigie... gi\|229163237, gi... - gi\|229163237\|ref\|ZP_04291192.1\| RNA polymerase sigma factor [Bacillus cereus R309803], gi\|228620300\|... gi\|228625565, gi... - gi\|229157906\|ref\|ZP_04285980.1\| RNA polymerase sigma factor [Bacillus cereus ATCC 4342], gi\|22862556... gi\|228585119, gi... - gi\|229198419\|ref\|ZP_04325125.1\| RNA polymerase sigma factor [Bacillus cereus m1293], gi\|228585119\|gb...	2.0E-82	[1..373]	[1..375]
gi\|3062909 - gi\|3062909\|dbj\|BAA25730.1\| SigA [Bacillus sp.]	1.0E-81	[1..373]	[1..372]
gi\|56421017, gi\|... - gi\|56421017\|ref\|YP_148335.1\| RNA polymerase sigma factor RpoD [Geobacillus kaustophilus HTA426], gi\|... gi\|220706653, gi... - gi\|221089364\|ref\|ZP_03558883.1\| RNA polymerase, sigma 70 subunit, RpoD family [Geobacillus sp. Y412M...	1.0E-81	[1..373]	[1..375]
RPOD_BACHD - RNA polymerase sigma factor rpoD OS=Bacillus halodurans GN=sigA PE=3 SV=2 SIGA_BACHD - RNA polymerase sigma factor SigA OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344...	2.0E-81	[1..373]	[1..372]
gi\|56963455, gi\|... - gi\|56963455\|ref\|YP_175186.1\| RNA polymerase sigma factor RpoD [Bacillus clausii KSM-K16], gi\|5690969...	3.0E-81	[1..373]	[1..373]
gi\|45437587, gi\|... - gi\|45442721\|ref\|NP_994260.1\| RNA polymerase sigma factor RpoD [Yersinia pestis biovar Microtus str. ...	8.0E-81	[3..373]	[232..630]
gi\|238719206, gi... - gi\|77962309\|ref\|ZP_00826131.1\| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)...	1.0E-80	[3..373]	[235..633]

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Predicted Domain #1

Region A:
Residues: [1-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKPARSKQ IETEMTLEQV KEQLTELGKK RGVLTYEEIA ERMNGFEIES DQMDEYYEYL  60
   61 GEQGIDLVGD NDEGPNNHQI TKTEEEFDLN DLSVPPGVKI NDPVRMYLKE IGRVDLLSAE 120
  121 EEIRLATRIE EGDEEAKRRL AEANLRLVVS IAKRYVGRGM LFLDLIQEGN MGLIKAVEKF 180
  181 DYRKGFKFST YATWWIRQAI TRAIADQART IRIPVHMVET INKLIRVQRQ LLQDLGREPS 240
  241 PEEIGEEMDL APEKVREILK IAQEPVSLET PIGEEDDSHL GDFIEDQEAT SPADHAAYEL 300
  301 LKEQLEDVLD TLTDREENVL RLRFGLDDGR TRTLEEVGKV FGVTRERIRQ IEAKALRKLR 360
  361 HPSRSKRLKD FLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.522879
Match:	1l9zH
Description:	DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits