YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264558, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264558, gi|....

Description	E-value	Query Range	Subject Range
gi\|106771088, gi... - gi\|148654644\|ref\|YP_001274849.1\| response regulator receiver protein [Roseiflexus sp. RS-1], gi\|1485...	3.0E-20	[7..74]	[4..71]
gi\|89095961, gi\|... - gi\|89095961\|ref\|ZP_01168855.1\| two-component response regulator [Bacillus sp. NRRL B-14911], gi\|8908...	1.0E-19	[4..74]	[156..226]
gi\|56421685, gi\|... - gi\|56421685\|ref\|YP_149003.1\| two-component response regulator (extracellular proteinase response reg...	2.0E-19	[1..74]	[150..223]
gi\|227534839, gi... - gi\|227534839\|ref\|ZP_03964888.1\| LuxR family response regulator [Lactobacillus paracasei subsp. parac... gi\|116105296, gi... - gi\|116495146\|ref\|YP_806880.1\| DNA-binding response regulator [Lactobacillus casei ATCC 334], gi\|1161... gi\|190712956, gi... - gi\|191638654\|ref\|YP_001987820.1\| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus... gi\|239526491, gi... - gi\|239632026\|ref\|ZP_04675057.1\| DNA-binding response regulator [Lactobacillus paracasei subsp. parac...	2.0E-19	[2..73]	[137..208]
gi\|52787473, gi\|... - gi\|52787473\|ref\|YP_093302.1\| DegU [Bacillus licheniformis ATCC 14580], gi\|52349975\|gb\|AAU42609.1\| De... gi\|106880136, gi... - gi\|56310547\|emb\|CAE82205.1\| two-component response regulator [Bacillus licheniformis], gi\|106880142\|...	3.0E-19	[4..74]	[158..228]
gi\|221325027 - gi\|221325027\|ref\|ZP_03606321.1\| DegU [Bacillus subtilis subsp. subtilis str. SMY] gi\|221320742 - gi\|221320742\|ref\|ZP_03602036.1\| DegU [Bacillus subtilis subsp. subtilis str. JH642] gi\|221315827 - gi\|221315827\|ref\|ZP_03597632.1\| DegU [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi\|154353515, gi... - gi\|154687664\|ref\|YP_001422825.1\| DegU [Bacillus amyloliquefaciens FZB42], gi\|154353515\|gb\|ABS75594.1... DEGU_BACSU - Transcriptional regulatory protein DegU OS=Bacillus subtilis (strain 168) GN=degU PE=1 SV=2 DEGU_BACSU - Transcriptional regulatory protein degU OS=Bacillus subtilis GN=degU PE=3 SV=2 gi\|219937642 - gi\|219937642\|emb\|CAJ97429.1\| transcriptional regulatory protein [Bacillus subtilis subsp. spizizenii...	3.0E-19	[4..74]	[158..228]
gi\|219994325, gi... - gi\|89209594\|ref\|ZP_01187989.1\| regulatory protein, LuxR:Response regulator receiver [Halothermothrix...	3.0E-19	[12..74]	[148..210]
gi\|89202930, gi\|... - gi\|89202930\|ref\|ZP_01181634.1\| regulatory protein, LuxR:Response regulator receiver [Bacillus cereus...	7.0E-19	[2..73]	[139..210]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEKAYQSKP LLTKREREVF ELLVQDKTTK EIAGELFISE KTVRNHISNA MQKLGVKGRS  60
   61 QAVVELLRMG ELEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.221849
Match:	1fseA
Description:	Germination protein GerE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	4.3783822692838	bayes_pls_golite062009
DNA binding	2.98242537415469	bayes_pls_golite062009
nucleic acid binding	2.90897931927895	bayes_pls_golite062009
transcription factor activity	2.57346479183384	bayes_pls_golite062009
binding	1.861833300221	bayes_pls_golite062009
two-component response regulator activity	1.47327435257738	bayes_pls_golite062009
signal transducer activity	1.437458964114	bayes_pls_golite062009
molecular transducer activity	1.437458964114	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: