YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259345, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259345, gi|....

Description	E-value	Query Range	Subject Range
gi\|229331701, gi... - gi\|229497223\|ref\|ZP_04390924.1\| 6-phosphofructokinase [Geobacillus sp. Y412MC52], gi\|229331701\|gb\|EE... gi\|220707901, gi... - gi\|221088139\|ref\|ZP_03557672.1\| 6-phosphofructokinase [Geobacillus sp. Y412MC61], gi\|220707901\|gb\|EE... PFKA_GEOKA - ATP-dependent 6-phosphofructokinase OS=Geobacillus kaustophilus (strain HTA426) GN=pfkA PE=3 SV=1 K6PF_GEOKA - 6-phosphofructokinase OS=Geobacillus kaustophilus GN=pfkA PE=3 SV=1	0.0	[1..319]	[1..319]
gi\|228960867, gi... - gi\|228960867\|ref\|ZP_04122500.1\| 6-phosphofructokinase [Bacillus thuringiensis serovar pakistani str.... gi\|228836298, gi... - gi\|228923344\|ref\|ZP_04086632.1\| 6-phosphofructokinase [Bacillus thuringiensis serovar huazhongensis ... gi\|229048306, gi... - gi\|229048306\|ref\|ZP_04193874.1\| 6-phosphofructokinase [Bacillus cereus AH676], gi\|228723031\|gb\|EEL74... gi\|228791989, gi... - gi\|228967697\|ref\|ZP_04128716.1\| 6-phosphofructokinase [Bacillus thuringiensis serovar sotto str. T04... gi\|229129883, gi... - gi\|229129883\|ref\|ZP_04258849.1\| 6-phosphofructokinase [Bacillus cereus BDRD-Cer4], gi\|228653574\|gb\|E... gi\|229112065, gi... - gi\|229112065\|ref\|ZP_04241608.1\| 6-phosphofructokinase [Bacillus cereus Rock1-15], gi\|228671388\|gb\|EE... gi\|229152794, gi... - gi\|229152794\|ref\|ZP_04280977.1\| 6-phosphofructokinase [Bacillus cereus m1550], gi\|228630614\|gb\|EEK87... gi\|228636269, gi... - gi\|229147159\|ref\|ZP_04275517.1\| 6-phosphofructokinase [Bacillus cereus BDRD-ST24], gi\|228636269\|gb\|E... gi\|229192800, gi... - gi\|229192800\|ref\|ZP_04319758.1\| 6-phosphofructokinase [Bacillus cereus ATCC 10876], gi\|228590639\|gb\|... gi\|229180918, gi... - gi\|229180918\|ref\|ZP_04308253.1\| 6-phosphofructokinase [Bacillus cereus 172560W], gi\|228602475\|gb\|EEK... PFKA_BACC2 - ATP-dependent 6-phosphofructokinase OS=Bacillus cereus (strain G9842) GN=pfkA PE=3 SV=1 gi\|206969743, gi... - gi\|206969743\|ref\|ZP_03230697.1\| 6-phosphofructokinase [Bacillus cereus AH1134], gi\|206735431\|gb\|EDZ5... PFKA_BACC4 - ATP-dependent 6-phosphofructokinase OS=Bacillus cereus (strain B4264) GN=pfkA PE=3 SV=1 gi\|75763142, gi\|... - gi\|75763142\|ref\|ZP_00742914.1\| 6-phosphofructokinase [Bacillus thuringiensis serovar israelensis ATC... gi\|228903117, gi... - gi\|228903117\|ref\|ZP_04067253.1\| 6-phosphofructokinase [Bacillus thuringiensis IBL 4222], gi\|22885652...	0.0	[1..319]	[1..319]
gi\|228647995, gi... - gi\|229135434\|ref\|ZP_04264221.1\| 6-phosphofructokinase [Bacillus cereus BDRD-ST196], gi\|228647995\|gb\|... PFKA_BACWK - ATP-dependent 6-phosphofructokinase OS=Bacillus weihenstephanensis (strain KBAB4) GN=pfkA PE=3 SV=1	0.0	[1..319]	[1..319]
PFKA_GEOSE - ATP-dependent 6-phosphofructokinase OS=Geobacillus stearothermophilus GN=pfkA PE=1 SV=2	0.0	[1..319]	[1..319]
PFKA_BACCN - ATP-dependent 6-phosphofructokinase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 ...	0.0	[1..319]	[1..319]
PFKA_BACCR - ATP-dependent 6-phosphofructokinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC...	0.0	[1..319]	[1..319]
gi\|52081420, gi\|... - gi\|52081420\|ref\|YP_080211.1\| 6-phosphofructokinase [Bacillus licheniformis ATCC 14580], gi\|52004631\|...	0.0	[1..319]	[4..322]
K6PF_BACSU - 6-phosphofructokinase OS=Bacillus subtilis GN=pfkA PE=3 SV=1 PFKA_BACSU - ATP-dependent 6-phosphofructokinase OS=Bacillus subtilis (strain 168) GN=pfkA PE=1 SV=1 gi\|221315186 - gi\|221315186\|ref\|ZP_03596991.1\| 6-phosphofructokinase [Bacillus subtilis subsp. subtilis str. NCIB 3... gi\|221320103 - gi\|221320103\|ref\|ZP_03601397.1\| 6-phosphofructokinase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221324385 - gi\|221324385\|ref\|ZP_03605679.1\| 6-phosphofructokinase [Bacillus subtilis subsp. subtilis str. SMY]	0.0	[1..319]	[1..319]

Back

Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRIGVLTSG GDSPGMNAAI RAVVRKAIFH DIEVYGIYHG YAGLISGHIE KLELGSVGDI  60
   61 IHRGGTKLYT ARCPEFKDPE VRLKGIEQLK KHGIEGLVVI GGDGSYQGAK KLTEQGFPCV 120
  121 GVPGTIDNDI PGTDFTIGFD TALNTVIDAI DKIRDTATSH ERTYVIEVMG RHAGDIALWA 180
  181 GLADGAETIL IPEEEYDMED VIARLKRGSE RGKKHSIIVV AEGVGSAIDI GKHIEEATNF 240
  241 DTRVTVLGHV QRGGSPSAQD RVLASRLGAR AVELLIAGKG GRCVGIQDNK LVDHDIIEAL 300
  301 AQKHTIDKDM YQLSKELSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	6pfkA
Description:	ATP-dependent phosphofructokinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
6-phosphofructokinase activity	12.7403693686468	bayes_pls_golite062009
phosphofructokinase activity	11.7059647240147	bayes_pls_golite062009
carbohydrate kinase activity	9.54757838113048	bayes_pls_golite062009
fructose-6-phosphate binding	7.12870468168491	bayes_pls_golite062009
fructose binding	7.0070117394116	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	2.40595318732289	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.20407391743017	bayes_pls_golite062009
kinase activity	2.09076306615481	bayes_pls_golite062009
transferase activity	1.97789134877808	bayes_pls_golite062009
catalytic activity	1.89212073381079	bayes_pls_golite062009
monosaccharide binding	0.93954836516667	bayes_pls_golite062009
binding	0.692710585652872	bayes_pls_golite062009
hydrolase activity	0.276140444059183	bayes_pls_golite062009
fructose-2,6-bisphosphate 2-phosphatase activity	0.13423626204854	bayes_pls_golite062009
sugar binding	0.0026978348896064	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: