YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264956, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	458 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264956, gi|....

Description	E-value	Query Range	Subject Range
SYG_THETN - Glycyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=glyQS PE=3 SV=1 SYG_CALS4 - Glycine--tRNA ligase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 1...	0.0	[3..458]	[6..461]
gi\|169298718, gi... - gi\|169343166\|ref\|ZP_02864187.1\| glycyl-tRNA synthetase [Clostridium perfringens C str. JGS1495], gi\|... gi\|182625996, gi... - gi\|182625996\|ref\|ZP_02953759.1\| glycyl-tRNA synthetase [Clostridium perfringens D str. JGS1721], gi\|... SYG_CLOPE - Glycine--tRNA ligase OS=Clostridium perfringens GN=glyQS PE=3 SV=1 gi\|110798906, gi... - gi\|110798906\|ref\|YP_697152.1\| glycyl-tRNA synthetase [Clostridium perfringens ATCC 13124], gi\|110673... gi\|170661742, gi... - gi\|170661742\|gb\|EDT14425.1\| glycyl-tRNA synthetase [Clostridium perfringens E str. JGS1987], gi\|1682... SYG_CLOPE - Glycine--tRNA ligase OS=Clostridium perfringens (strain 13 / Type A) GN=glyQS PE=3 SV=1 gi\|110803756, gi... - gi\|110803756\|ref\|YP_699720.1\| glycyl-tRNA synthetase [Clostridium perfringens SM101], gi\|110684257\|g... gi\|170710778, gi... - gi\|170710778\|gb\|EDT22960.1\| glycyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626], gi\|16... gi\|170713451, gi... - gi\|170713451\|gb\|EDT25633.1\| glycyl-tRNA synthetase [Clostridium perfringens CPE str. F4969], gi\|1682... gi\|182379763, gi... - gi\|182379763\|gb\|EDT77242.1\| glycyl-tRNA synthetase [Clostridium perfringens NCTC 8239], gi\|168218224...	0.0	[2..458]	[5..467]
gi\|152025958, gi... - gi\|89200239\|ref\|ZP_01178994.1\| Glycyl-tRNA synthetase, alpha2 dimer [Bacillus cereus subsp. cytotoxi...	0.0	[1..458]	[1..458]
SYG_BACHK - Glycyl-tRNA synthetase OS=Bacillus thuringiensis subsp. konkukian GN=glyQS PE=3 SV=1 SYG_BACHK - Glycine--tRNA ligase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=glyQS PE=3 SV=1	0.0	[1..458]	[1..458]
gi\|228647710, gi... - gi\|229135744\|ref\|ZP_04264516.1\| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST196], gi\|228647710\|gb... gi\|89156012, gi\|... - gi\|89206110\|ref\|ZP_01184673.1\| Glycyl-tRNA synthetase, alpha2 dimer [Bacillus weihenstephanensis KBA...	0.0	[1..458]	[1..458]
gi\|228903415, gi... - gi\|228903415\|ref\|ZP_04067542.1\| Glycyl-tRNA synthetase [Bacillus thuringiensis IBL 4222], gi\|2288561... gi\|228968019, gi... - gi\|228968019\|ref\|ZP_04129027.1\| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str. T0... gi\|75760257, gi\|... - gi\|75760257\|ref\|ZP_00740310.1\| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar israelensis AT...	0.0	[1..458]	[30..487]
gi\|228823451, gi... - gi\|228936204\|ref\|ZP_04099004.1\| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar andalousiensi... gi\|228917544, gi... - gi\|228917544\|ref\|ZP_04081089.1\| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BG... gi\|228988159, gi... - gi\|228988159\|ref\|ZP_04148257.1\| Glycyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis ... gi\|65316905 - gi\|65316905\|ref\|ZP_00389864.1\| COG0423: Glycyl-tRNA synthetase (class II) [Bacillus anthracis str. A... gi\|228778083, gi... - gi\|228981598\|ref\|ZP_04141894.1\| Glycyl-tRNA synthetase [Bacillus thuringiensis Bt407], gi\|228778083\|... gi\|229141633, gi... - gi\|229141633\|ref\|ZP_04270164.1\| Glycyl-tRNA synthetase [Bacillus cereus BDRD-ST26], gi\|228641831\|gb\|... gi\|228659005, gi... - gi\|229124457\|ref\|ZP_04253644.1\| Glycyl-tRNA synthetase [Bacillus cereus 95/8201], gi\|228659005\|gb\|EE... gi\|229199064, gi... - gi\|229199064\|ref\|ZP_04325747.1\| Glycyl-tRNA synthetase [Bacillus cereus m1293], gi\|228584335\|gb\|EEK4... gi\|228624952, gi... - gi\|229158516\|ref\|ZP_04286576.1\| Glycyl-tRNA synthetase [Bacillus cereus ATCC 4342], gi\|228624952\|gb\|...	0.0	[4..458]	[1..455]
SYG_CLOB8 - Glycine--tRNA ligase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyQS PE=3 SV=1	0.0	[2..458]	[5..463]
SYG_STAES - Glycine--tRNA ligase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=glyQS PE=3 SV=1 SYG_STAEQ - Glycine--tRNA ligase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=glyQS PE=3 SV=1 SYG_STAEP - (Q8CSD5) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)	0.0	[1..458]	[2..463]
SYG_STAAT - Glycine--tRNA ligase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=glyQS PE=3 SV=1 gi\|227557763, gi... - gi\|227557763\|ref\|ZP_03987810.1\| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MN8], gi... gi\|251802009, gi... - gi\|251814561\|ref\|ZP_04829034.1\| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH70], ... gi\|253314936 - gi\|253314936\|ref\|ZP_04838149.1\| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. CF-... gi\|253724007, gi... - gi\|253732218\|ref\|ZP_04866383.1\| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_T... gi\|269203193\|ref... - glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98] gi\|253733185, gi... - gi\|253733185\|ref\|ZP_04867350.1\| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130],... gi\|255006351 - gi\|255006351\|ref\|ZP_05144952.2\| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50-ome... SYG_STAAC - Glycine--tRNA ligase OS=Staphylococcus aureus (strain COL) GN=glyQS PE=3 SV=1 SYG_STAA8 - Glycine--tRNA ligase OS=Staphylococcus aureus (strain NCTC 8325) GN=glyQS PE=3 SV=1 SYG_STAA1 - Glycine--tRNA ligase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=glyQS PE=3 SV=1 SYG_STAAS - Glycine--tRNA ligase OS=Staphylococcus aureus (strain MSSA476) GN=glyQS PE=3 SV=1 SYG_STAA3 - Glycine--tRNA ligase OS=Staphylococcus aureus (strain USA300) GN=glyQS PE=3 SV=1 SYG_STAAE - Glycine--tRNA ligase OS=Staphylococcus aureus (strain Newman) GN=glyQS PE=3 SV=1 SYG_STAAN - Glycine--tRNA ligase OS=Staphylococcus aureus (strain N315) GN=glyQS PE=1 SV=1 gi\|25293191 - pir\|\|D89937 glycyl-tRNA synthetase [imported] - Staphylococcus aureus (strain N315) gi\|87127730\|gb\|A... - glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300], glycyl-tRNA synthetase [Staphyl... SYG_STAAW - Glycine--tRNA ligase OS=Staphylococcus aureus (strain MW2) GN=glyQS PE=3 SV=1 SYG_STAAR - Glycine--tRNA ligase OS=Staphylococcus aureus (strain MRSA252) GN=glyQS PE=3 SV=1 SYG_STAAM - Glycine--tRNA ligase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=glyQS PE=3 SV=1 SYG_STAA2 - Glycine--tRNA ligase OS=Staphylococcus aureus (strain JH1) GN=glyQS PE=3 SV=1 SYG_STAA9 - Glycine--tRNA ligase OS=Staphylococcus aureus (strain JH9) GN=glyQS PE=3 SV=1 gi\|221137872 - gi\|221137872\|ref\|ZP_03562674.1\| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. JKD... gi\|221140015 - gi\|221140015\|ref\|ZP_03564508.1\| glycyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. JKD...	0.0	[2..458]	[3..463]

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Predicted Domain #1

Region A:
Residues: [1-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSMEQVVNL AKHRGFVFPG SEIYGGLANT WDYGPLGIEL KNNVKKAWWK KFIQESPYNV  60
   61 GLDAAILMNP KTWIASGHVG NFNDPMIDCK KCKARHRADK LIEDALDAKG IEMVVDGLTF 120
  121 DQMADLMKEH EVKCPDCGSE EFTEIRQFNL MFKTFQGVTE SSTNEIFLRP ETAQGIFVNF 180
  181 KNVQRSMRKK LPFGIGQIGK SFRNEITPGN FTFRTREFEQ MELEFFCKPG EDLEWFAFWR 240
  241 ETCKNWLLSL GMTEESMRLR DHGEEELSHY SNATTDIEFK FPFGWGELWG VASRTDFDLK 300
  301 RHMEHSNEDF NYIDPQTNER YVPYCIEPSL GADRVTLAFL CDAYEEEQLE NDSRTVLRFH 360
  361 PALAPYKAAI LPLSKKLSEG ATEVFAELAK DFMVDFDETG SIGKRYRRQD EIGTPFCITY 420
  421 DFDSVEDKAV TVRDRDTMEQ VRMPISELKG FLEKKIQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.39794
Match:	1atiA
Description:	Glycyl-tRNA synthetase (GlyRS), C-terminal domain; Glycyl-tRNA synthetase (GlyRS)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	7.20130208252979	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	7.20130208252979	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.18884532579969	bayes_pls_golite062009
ligase activity	6.46734856052643	bayes_pls_golite062009
glycine-tRNA ligase activity	5.5894157660836	bayes_pls_golite062009
catalytic activity	2.36416267096403	bayes_pls_golite062009
phenylalanine-tRNA ligase activity	1.82630084735103	bayes_pls_golite062009
serine-tRNA ligase activity	1.67995723068335	bayes_pls_golite062009
threonine-tRNA ligase activity	1.61348476813499	bayes_pls_golite062009
histidine-tRNA ligase activity	1.44658852946316	bayes_pls_golite062009
alanine-tRNA ligase activity	1.37855221028045	bayes_pls_golite062009
lysine-tRNA ligase activity	1.2286808923607	bayes_pls_golite062009
asparagine-tRNA ligase activity	0.50755166961092	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: