YRC Public Data Repository - Protein Structure Prediction

Protein:	IHFA_XYLFA
Organism:	Xylella fastidiosa 9a5c
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IHFA_XYLFA.

Description	E-value	Query Range	Subject Range
gi\|113724087, gi... - gi\|113875483\|ref\|ZP_01415608.1\| nucleoid DNA-binding protein-like [Sinorhizobium medicae WSM419], gi...	126.0	[0..3]	[92..101]
gi\|31789462 - gi\|31789462\|gb\|AAP58576.1\| putative DNA-binding protein [uncultured Acidobacteria bacterium]	122.0	[0..3]	[94..1]
IHFA_XANAC - Integration host factor subunit alpha OS=Xanthomonas axonopodis pv. citri GN=ihfA PE=3 SV=1 IHFA_XANCP - Integration host factor subunit alpha OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / ... IHFA_XANCP - Integration host factor subunit alpha OS=Xanthomonas campestris pv. campestris GN=ihfA PE=3 SV=1 gi\|2120723, gi\|1... - pir\|\|S67817 integration host factor alpha chain - Xanthomonas campestris, gi\|1172091\|gb\|AAA86369.1\| ... IHFA_XANOR - Integration host factor subunit alpha OS=Xanthomonas oryzae pv. oryzae GN=ihfA PE=3 SV=1 IHFA_XANC5 - Integration host factor subunit alpha OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=ih... gi\|166711594 - gi\|166711594\|ref\|ZP_02242801.1\| integration host factor subunit alpha [Xanthomonas oryzae pv. oryzic... IHFA_XANOM - Integration host factor subunit alpha OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=ihfA ... IHFA_XANCB - Integration host factor subunit alpha OS=Xanthomonas campestris pv. campestris (strain B100) GN=ihfA... IHFA_XANC8 - Integration host factor subunit alpha OS=Xanthomonas campestris pv. campestris (strain 8004) GN=ihfA... IHFA_XANOR - Integration host factor subunit alpha OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) GN... IHFA_XANAC - Integration host factor subunit alpha OS=Xanthomonas axonopodis pv. citri (strain 306) GN=ihfA PE=3 ...	122.0	[0..1]	[99..1]
IHFA_XYLFM - Integration host factor subunit alpha OS=Xylella fastidiosa (strain M12) GN=ihfA PE=3 SV=1 IHFA_XYLF2 - Integration host factor subunit alpha OS=Xylella fastidiosa (strain M23) GN=ihfA PE=3 SV=1 IHFA_XYLFT - Integration host factor subunit alpha OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ihfA... gi\|22994049, gi\|... - gi\|71275161\|ref\|ZP_00651448.1\| Integration host factor, alpha subunit [Xylella fastidiosa Dixon], gi... gi\|71898242, gi\|... - gi\|71901128\|ref\|ZP_00683234.1\| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1], gi...	120.0	[0..1]	[99..1]
gi\|17982826, gi\|... - gi\|17987160\|ref\|NP_539794.1\| DNA-binding protein HU-alpha [Brucella melitensis 16M], gi\|17982826\|gb\|... gi\|25294361 - pir\|\|AG3361 DNA-binding protein Hu-alpha [imported] - Brucella melitensis (strain 16M) gi\|225627579, gi... - gi\|225627579\|ref\|ZP_03785616.1\| DNA-binding protein HRL18 [Brucella ceti str. Cudo], gi\|225617584\|gb... gi\|237788827, gi... - gi\|237815529\|ref\|ZP_04594526.1\| DNA-binding protein HRL18 [Brucella abortus str. 2308 A], gi\|2377888...	120.0	[0..1]	[93..1]
gi\|29895202, gi\|... - gi\|30019658\|ref\|NP_831289.1\| DNA-binding protein HU [Bacillus cereus ATCC 14579], gi\|29895202\|gb\|AAP... gi\|74488445, gi\|... - gi\|75764066\|ref\|ZP_00743668.1\| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis AT...	120.0	[0..3]	[92..25]
DBH1_BACHD - DNA-binding protein HU-1 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... DBH1_BACHD - DNA-binding protein HU-1 OS=Bacillus halodurans GN=hup1 PE=3 SV=1	119.0	[0..3]	[92..1]
IHFB_RHORT - Integration host factor subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 4...	119.0	[0..3]	[97..1]
IHFA_ECOHS - Integration host factor subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=ihfA PE=3 SV=1	118.0	[0..1]	[99..1]
gi\|255663662, gi... - gi\|83720646\|ref\|YP_443105.1\| integration host factor subunit alpha [Burkholderia thailandensis E264]... gi\|167620270 - gi\|167620270\|ref\|ZP_02388901.1\| integration host factor subunit alpha [Burkholderia thailandensis Bt... gi\|167582112 - gi\|167582112\|ref\|ZP_02374986.1\| integration host factor subunit alpha [Burkholderia thailandensis TX...	118.0	[0..2]	[98..35]

Back

Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTKAEMVE RLFDEVGLNK REAKEFVDTF FDLLRDALEQ GRQIKLSGFG NFELRCKNQR  60
   61 PGRNPKTGEE IPISARTVVT FRSGQKLKER VDAYVGSRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	1ihfA
Description:	Integration host factor alpha subunit (IHFA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA binding	5.25387001942839	bayes_pls_golite062009
nucleic acid binding	5.15205953864352	bayes_pls_golite062009
binding	3.99545980559645	bayes_pls_golite062009
transcription regulator activity	1.74311685689448	bayes_pls_golite062009
transcription activator activity	0.38454381783388	bayes_pls_golite062009
protein binding	0.262917207132993	bayes_pls_golite062009
transcription repressor activity	0.176747764275359	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: