YRC Public Data Repository - Protein Structure Prediction

Protein:	tr\|J5L8J3\|J5L8J3...
Organism:	SPECIES UNKNOWN
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tr|J5L8J3|J5L8J3....

Description	E-value	Query Range	Subject Range
MGSA_VIBPA - Methylglyoxal synthase OS=Vibrio parahaemolyticus GN=mgsA PE=3 SV=1 MGSA_VIBPA - Methylglyoxal synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=mgsA PE=3 ... gi\|153838728, gi... - gi\|153838728\|ref\|ZP_01991395.1\| methylglyoxal synthase [Vibrio parahaemolyticus AQ3810], gi\|14974785...	265.0	[0..1]	[151..1]
gi\|77974894 - gi\|77974894\|ref\|ZP_00830432.1\| COG1803: Methylglyoxal synthase [Yersinia frederiksenii ATCC 33641]	263.0	[0..1]	[152..27]
gi\|90413297, gi\|... - gi\|90413297\|ref\|ZP_01221291.1\| methylglyoxal synthase [Photobacterium profundum 3TCK], gi\|90325698\|g...	263.0	[0..1]	[151..1]
gi\|77979191 - gi\|77979191\|ref\|ZP_00834611.1\| COG1803: Methylglyoxal synthase [Yersinia intermedia ATCC 29909]	263.0	[0..1]	[152..1]
MGSA_VIBVU - Methylglyoxal synthase OS=Vibrio vulnificus GN=mgsA PE=3 SV=1 MGSA_VIBVY - Methylglyoxal synthase OS=Vibrio vulnificus (strain YJ016) GN=mgsA PE=3 SV=1 MGSA_VIBVU - Methylglyoxal synthase OS=Vibrio vulnificus (strain CMCP6) GN=mgsA PE=3 SV=1	262.0	[0..1]	[151..1]
gi\|90439871, gi\|... - gi\|90579038\|ref\|ZP_01234848.1\| methylglyoxal synthase [Vibrio angustum S14], gi\|90439871\|gb\|EAS65052...	262.0	[0..1]	[151..1]
MGSA_PHOPR - Methylglyoxal synthase OS=Photobacterium profundum GN=mgsA PE=3 SV=2 MGSA_PHOPR - Methylglyoxal synthase OS=Photobacterium profundum (strain SS9) GN=mgsA PE=3 SV=2	262.0	[0..1]	[151..1]
MGSA_HISS2 - Methylglyoxal synthase OS=Histophilus somni (strain 2336) GN=mgsA PE=3 SV=1	261.0	[0..1]	[152..1]
MGSA_HAES1 - Methylglyoxal synthase OS=Haemophilus somnus (strain 129Pt) GN=mgsA PE=3 SV=1	261.0	[0..1]	[152..1]
gi\|194539096, gi... - gi\|75855948\|ref\|ZP_00763586.1\| COG1803: Methylglyoxal synthase [Vibrio sp. Ex25], gi\|254229815\|ref\|Z... gi\|91188321, gi\|... - gi\|91227912\|ref\|ZP_01262051.1\| methylglyoxal synthase [Vibrio alginolyticus 12G01], gi\|91188321\|gb\|E...	261.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTARTLSV NKHIALVAHD HCKQDLINWC KTHRTLLAQH TLYATGTTGN LIQKEANLPI  60
   61 KSLLSGPMGG DQQLGGLIAE KQIDVLIFFW DPMNAVPHDP DVKALMRIAT VWNIPVAMNM 120
  121 ATADFLITSP SFAQETQVRI PDYDGYLKER LK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.045757
Match:	1b93A
Description:	Methylglyoxal synthase, MgsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylglyoxal synthase activity	7.67158041469211	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
carbon-oxygen lyase activity	0.8193600732138	bayes_pls_golite062009
carbon-oxygen lyase activity, acting on phosphates	0.74427062677768	bayes_pls_golite062009
lyase activity	0.129701662862796	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: