YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25519588
Organism:	Agrobacterium tumefaciens
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25519588.

Description	E-value	Query Range	Subject Range
gi\|17935044, gi\|... - gi\|17935044\|ref\|NP_531834.1\| NTP pyrophosphohydrolase, MutT family [Agrobacterium tumefaciens str. C... gi\|25303393 - pir\|\|AH2716 NTP pyrophosphohydrolase, MutT family [imported] - Agrobacterium tumefaciens (strain C58...	169.0	[0..46]	[254..1]
gi\|91691007, gi\|... - gi\|91778347\|ref\|YP_553555.1\| hypothetical protein Bxe_B1763 [Burkholderia xenovorans LB400], gi\|9169...	159.0	[0..55]	[247..3]
gi\|76574817 - gi\|76574817\|gb\|ABA47291.1\| NTP pyrophosphohydrolase [Pseudomonas cichorii]	157.0	[0..59]	[247..7]
gi\|205354101, gi... - gi\|205354101\|ref\|YP_002227902.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enteric... gi\|198243748, gi... - gi\|198243748\|ref\|YP_002217165.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serova... gi\|197364055, gi... - gi\|197364055\|ref\|YP_002143692.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enteric... gi\|197240165, gi... - gi\|197261910\|ref\|ZP_03161984.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar... gi\|213424341 - gi\|213424341\|ref\|ZP_03357165.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica... gi\|213419639 - gi\|213419639\|ref\|ZP_03352705.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica... gi\|213052522 - gi\|213052522\|ref\|ZP_03345400.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica... gi\|207858444, gi... - gi\|207858444\|ref\|YP_002245095.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enteric... gi\|205331205, gi... - gi\|205331205\|gb\|EDZ17969.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar 4,[... gi\|25303394, gi\|... - gi\|25303394\|pir\|\|AI0889 conserved hypothetical protein STY3363 [imported] - Salmonella enterica subs... gi\|56129383, gi\|... - gi\|56415126\|ref\|YP_152201.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica se... gi\|16421741, gi\|... - gi\|16766485\|ref\|NP_462100.1\| ADP-ribose pyrophosphatase NudF [Salmonella typhimurium LT2], gi\|164217... gi\|29143447, gi\|... - gi\|29143447\|ref\|NP_806789.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica se... gi\|16761960 - gi\|16761960\|ref\|NP_457577.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica se... gi\|213855668 - gi\|213855668\|ref\|ZP_03383908.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica... lcl\|NC_016856.1_... - [gene=nudF] [protein=ADP-ribose pyrophosphatase NudF] [protein_id=YP_005239357.1] [location=compleme... gi\|213645893 - gi\|213645893\|ref\|ZP_03375946.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica... gi\|213622048 - gi\|213622048\|ref\|ZP_03374831.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica... gi\|213583542 - gi\|213583542\|ref\|ZP_03365368.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica... gi\|214001840 - gi\|214001840\|ref\|ZP_03412575.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica...	157.0	[0..48]	[251..1]
gi\|195633661, gi... - gi\|195633661\|gb\|EDX52075.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar New... gi\|168262857, gi... - gi\|205348594\|gb\|EDZ35225.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Had... gi\|205337887, gi... - gi\|205337887\|gb\|EDZ24651.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Hei... gi\|197288969, gi... - gi\|197288969\|gb\|EDY28340.1\| hydrolase, NUDIX family protein [Salmonella enterica subsp. enterica ser... gi\|62129332, gi\|... - gi\|62181699\|ref\|YP_218116.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica se... gi\|205333872, gi... - gi\|205333872\|gb\|EDZ20636.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Ken... gi\|205323325, gi... - gi\|205323325\|gb\|EDZ11164.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Sai... gi\|238909986 - gi\|238909986\|ref\|ZP_04653823.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica... gi\|224584986, gi... - gi\|224584986\|ref\|YP_002638785.1\| hypothetical protein SPC_3259 [Salmonella enterica subsp. enterica ... gi\|204928165, gi... - gi\|204928165\|ref\|ZP_03219365.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar... gi\|199605157, gi... - gi\|200388059\|ref\|ZP_03214671.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar... gi\|197249833, gi... - gi\|197249833\|ref\|YP_002148112.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serova... gi\|194710227, gi... - gi\|194734725\|ref\|YP_002116140.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serova... gi\|194469990, gi... - gi\|194469990\|ref\|ZP_03075974.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar... gi\|194450031, gi... - gi\|194450031\|ref\|YP_002047182.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enteric... gi\|194442306, gi... - gi\|194442306\|ref\|YP_002042452.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serova... gi\|168819752, gi... - gi\|205343414\|gb\|EDZ30178.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Wel...	157.0	[0..48]	[251..1]
gi\|86357123, gi\|... - gi\|86357123\|ref\|YP_469015.1\| putative ADP-ribose pyrophosphatase protein [Rhizobium etli CFN 42], gi...	155.0	[0..57]	[251..2]
gi\|235002185, gi... - gi\|237509980\|ref\|ZP_04522695.1\| putative hydrolase YffH [Burkholderia pseudomallei MSHR346], gi\|2350... gi\|255665847 - gi\|255665847\|ref\|ZP_05409806.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes ... gi\|161359448 - gi\|161359448\|ref\|ZP_02105316.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes ... gi\|161367952 - gi\|161367952\|ref\|ZP_02107523.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes ... gi\|167725044 - gi\|167725044\|ref\|ZP_02408280.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes ... gi\|167743979 - gi\|167743979\|ref\|ZP_02416753.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes ... gi\|167851006 - gi\|167851006\|ref\|ZP_02476514.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes ... gi\|167899606 - gi\|167899606\|ref\|ZP_02487007.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes ... gi\|167907920 - gi\|167907920\|ref\|ZP_02495125.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes ... gi\|167916285 - gi\|167916285\|ref\|ZP_02503376.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes ... gi\|126442443, gi... - gi\|126442443\|ref\|YP_001063938.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes... gi\|53723063, gi\|... - gi\|53723063\|ref\|YP_112048.1\| hypothetical protein BPSS2045 [Burkholderia pseudomallei K96243], gi\|52... gi\|134250417, gi... - gi\|134278633\|ref\|ZP_01765347.1\| nudix hydrolase, YffH family [Burkholderia pseudomallei 305], gi\|134...	154.0	[0..55]	[246..3]
gi\|242313965, gi... - gi\|242313965\|ref\|ZP_04812982.1\| nudix hydrolase, YffH family [Burkholderia pseudomallei 1106b], gi\|2... gi\|76583027, gi\|... - gi\|76818554\|ref\|YP_336321.1\| hypothetical protein BURPS1710b_A1164 [Burkholderia pseudomallei 1710b]... gi\|83716564, gi\|... - gi\|83716564\|ref\|YP_438475.1\| hypothetical protein BTH_II0273 [Burkholderia thailandensis E264], gi\|8... gi\|126457059, gi... - gi\|126457059\|ref\|YP_001076822.1\| NUDIX family hydrolase [Burkholderia pseudomallei 1106a], gi\|126230... gi\|254215796, gi... - gi\|254264794\|ref\|ZP_04955659.1\| nudix hydrolase, YffH family [Burkholderia pseudomallei 1710a], gi\|2... gi\|194519132, gi... - gi\|254194497\|ref\|ZP_04900929.1\| nudix hydrolase, YffH family [Burkholderia pseudomallei S13], gi\|194... gi\|254185785, gi... - gi\|254185785\|ref\|ZP_04892303.1\| nudix hydrolase, YffH family [Burkholderia pseudomallei Pasteur 5223... gi\|254184568, gi... - gi\|254184568\|ref\|ZP_04891157.1\| nudix hydrolase, YffH family [Burkholderia pseudomallei 1655], gi\|19...	153.0	[0..58]	[246..3]
gi\|113887703, gi... - gi\|78690790\|ref\|ZP_00855428.1\| Nucleoside diphosphate pyrophosphatase [Shewanella sp. MR-7], gi\|7850...	152.0	[0..54]	[250..2]
gi\|24375391, gi\|... - gi\|24375391\|ref\|NP_719434.1\| MutT/nudix family protein [Shewanella oneidensis MR-1], gi\|24350221\|gb\|... SO3903 - MutT/nudix family protein	152.0	[0..54]	[250..2]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLMVAPRFT TTKYGSAAAT RPARLDIAPP YRQSEATPRQ ARTYPVTQTQ AKNVPADIDS  60
   61 GRIRLVEKET VWKGFVHMQK LIFDQRMPDG RTMRIVREVH DHGSAAAILL YDVKRDSVVM 120
  121 VRQFRPAAFV NGDQSFMIEV PAGLLDDDDA ADAIRREAME ESGYAVEKVE YLFDMYASPG 180
  181 TLTEKVSLFV ARIDLDVQAG NGGGLEDEGE DLEVLTYGLD EAFAMIASGE ITDSKTIILL 240
  241 QWAMLNRDRL LSRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1viuA
Description:	Crystal structure of putative ADP ribose pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	1.0879699007552	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.859040726089354	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.859001295204634	bayes_pls_golite062009
pyrophosphatase activity	0.231401568856773	bayes_pls_golite062009
binding	0.165092558977235	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: