YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|49531851, gi|...
Organism: Acinetobacter sp. ADP1
Length: 283 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49531851, gi|....

Description E-value Query
Range
Subject
Range
gi|92392901, gi|... - gi|93005223|ref|YP_579660.1| lytic transglycosylase, catalytic [Psychrobacter cryohalolentis K5], gi...
174.0 [0..5] [208..41]

Back

Predicted Domain #1
Region A:
Residues: [1-283]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRKHLSLH FILASTLSCT AMSHVFAGQI FVYKDKSGGT LLTNRKSSDP SMTKVKATYY  60
   61 PDSNIHSYNN WGASEASVLP SYSKNRNAFD QIIHQASQRH GISEGLIKAV MHTESGFNVY 120
  121 ARSPVGAQGL MQLMPATARR FNVSNAYDPQ ENIFGGAQYL SWLLKRFNGN TQLALAAYNA 180
  181 GEGNVDKYGG IPPFRETQDY VRRVTSRYQN LYASGNTVSE NLATPQVIAQ SANYAPANNH 240
  241 VPETTKYSSQ RQIISLSEGT YTDAPNTYVT RNATASARIH ISN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.522879
Match: 1qsaA
Description: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
penicillin binding 2.64957480679626 bayes_pls_golite062009
catalytic activity 1.95328415115451 bayes_pls_golite062009
lysozyme activity 1.83799209924951 bayes_pls_golite062009
drug binding 1.54697929389118 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 1.16054683174437 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 1.07226857049823 bayes_pls_golite062009
hydrolase activity 0.677491712259 bayes_pls_golite062009
transferase activity, transferring glycosyl groups 0.45061419828567 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle