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View Structure Prediction Details

Protein: gi|54310323, gi|...
Organism: Photobacterium profundum SS9
Length: 196 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54310323, gi|....

Description E-value Query
Range
Subject
Range
gi|28805424, gi|... - gi|28897215|ref|NP_796820.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio parahaemo...
gi|28805424 - gi|28805424|dbj|BAC58704.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio parahaemol...
233.0 [0..1] [196..1]

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Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNAPVSNGR RRFLTATTSV VGGLGAVAVA VPFIKSWNPS ARAKAAGAPV EVDISKLEDG  60
   61 QMVRVEWRGK PVWVVRRGDA ILKELGEHDA QLRDPNSDEP QQPTYAHNKF RSVKPEIFLA 120
  121 VGICTHLGCS PTYLPDSFSE QVSGVSSGFF CPCHGSKFDM AGRVFAGVPA PLNLVVPPHM 180
  181 FVSDHSIIIG IDEGAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.0
Match: 1bccE
Description: ISP subunit of the mitochondrial cytochrome bc1-complex, watersoluble domain; Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ubiquinol-cytochrome-c reductase activity 9.65724929491711 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 9.65724929491711 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 9.125468664417 bayes_pls_golite062009
oxidoreductase activity 6.05060612159037 bayes_pls_golite062009
electron carrier activity 5.20213585732279 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 4.21571853217094 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 4.06768260706614 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 3.42417427779305 bayes_pls_golite062009
cation transmembrane transporter activity 3.16998920469705 bayes_pls_golite062009
ion transmembrane transporter activity 2.96169692239126 bayes_pls_golite062009
catalytic activity 0.746741393172769 bayes_pls_golite062009
iron-sulfur cluster binding 0.71220774812099 bayes_pls_golite062009
metal cluster binding 0.71220774812099 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.0925221440840771 bayes_pls_golite062009
substrate-specific transporter activity 0.00797690232905524 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle