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View Structure Prediction Details

Protein: DEOC_PHOPR
Organism: Photobacterium profundum SS9
Length: 257 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEOC_PHOPR.

Description E-value Query
Range
Subject
Range
gi|89051696, gi|... - gi|89072592|ref|ZP_01159164.1| deoxyribose-phosphate aldolase [Photobacterium sp. SKA34], gi|8905169...
325.0 [0..1] [257..1]

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Predicted Domain #1
Region A:
Residues: [1-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLKAAALR ALKLMDLTTL NDDDTDEKVI ALCKNAKTAV GNTAAVCIYP RFIPAAKKQL  60
   61 REQGTPEVRI ATVTNFPHGN DDIEIAVAET KAAVAYGADE VDVVFPYRAL IAGNADVGFE 120
  121 LVKQCKAACG DILLKVIIET GELKTEALIK QASELSIKAG ADFIKTSTGK VPVNATPEAA 180
  181 EIMLTVIKDM DVAKTVGFKP AGGVRTAEDA QAFLAMADRI LGGDWADNMH YRFGASSLLA 240
  241 NLLHTLGEGE EAAQGGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.0
Match: 1jclA
Description: Deoxyribose-phosphate aldolase DeoC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.67031204377352 bayes_pls_golite062009
deoxyribose-phosphate aldolase activity 2.42732299324236 bayes_pls_golite062009
kinase activity 1.94076427145239 bayes_pls_golite062009
fructose-bisphosphate aldolase activity 1.57588823292155 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 1.53236719840557 bayes_pls_golite062009
transaldolase activity 1.20024248197006 bayes_pls_golite062009
transferase activity 0.464721888799972 bayes_pls_golite062009
aldehyde-lyase activity 0.351872954170322 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle