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View Structure Prediction Details

Protein: GTE1_ARATH
Organism: Arabidopsis thaliana
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GTE1_ARATH.

Description E-value Query
Range
Subject
Range
gi|62321808 - gi|62321808|dbj|BAD95432.1| RING3 protein-like [Arabidopsis thaliana]
232.0 [0..1] [386..1]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVHVKEEPV LVPNCDVENT ELAVFNGNGE SELENFGTCV DEITDRVNQL EQKVVEVEHF  60
   61 YSTKDGAAQT NTSKSNSGGK KIAISQPNNS KGNSAGKEKS KGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HVSSPDLMRQ FATMFRQIAQ HKWAWPFLEP VDVKGLGLHD YYKVIEKPMD LGTIKKKMES  60
   61 SEYSNVREIY ADVRLVFKNA MRYNEEKEDV YVMAESLLEK FEEKWLLIMP KLVEEEKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.522879
Match: 1x0jA
Description: No description for 1x0jA was found.

Predicted Domain #3
Region A:
Residues: [222-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVDEEAEKHA NKQLTMEAAQ AEMARDLSNE LYEIDLQLEK LRESVVQRCR KLSTQEKKGL  60
   61 SAALGRLSPE DLSKALKMVS ESNPSFPAGA PEVELDIDVQ TDVTLWRLKV FVQEALKAAN 120
  121 KSSGGTNAQN NNNTGTGEIN KNNAKRRREI SDAINKASIK RAKKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle