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View Structure Prediction Details

Protein: GTE1_ARATH
Organism: Arabidopsis thaliana
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GTE1_ARATH.

Description E-value Query
Range
Subject
Range
gi|62321808 - gi|62321808|dbj|BAD95432.1| RING3 protein-like [Arabidopsis thaliana]
232.0 [0..1] [386..1]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVHVKEEPV LVPNCDVENT ELAVFNGNGE SELENFGTCV DEITDRVNQL EQKVVEVEHF  60
   61 YSTKDGAAQT NTSKSNSGGK KIAISQPNNS KGNSAGKEKS KGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HVSSPDLMRQ FATMFRQIAQ HKWAWPFLEP VDVKGLGLHD YYKVIEKPMD LGTIKKKMES  60
   61 SEYSNVREIY ADVRLVFKNA MRYNEEKEDV YVMAESLLEK FEEKWLLIMP KLVEEEKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.522879
Match: 1x0jA
Description: No description for 1x0jA was found.

Predicted Domain #3
Region A:
Residues: [222-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVDEEAEKHA NKQLTMEAAQ AEMARDLSNE LYEIDLQLEK LRESVVQRCR KLSTQEKKGL  60
   61 SAALGRLSPE DLSKALKMVS ESNPSFPAGA PEVELDIDVQ TDVTLWRLKV FVQEALKAAN 120
  121 KSSGGTNAQN NNNTGTGEIN KNNAKRRREI SDAINKASIK RAKKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle