YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52426021, gi\|...
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52426021, gi|....

Description	E-value	Query Range	Subject Range
gi\|218367774, gi... - gi\|218561005\|ref\|YP_002393918.1\| transcriptional repressor protein MetJ [Escherichia coli S88], gi\|2... gi\|218371343, gi... - gi\|218701357\|ref\|YP_002408986.1\| transcriptional repressor protein MetJ [Escherichia coli IAI39], gi... gi\|115515327, gi... - gi\|117626203\|ref\|YP_859526.1\| transcriptional repressor protein MetJ [Escherichia coli APEC O1], gi\|... gi\|91213480, gi\|... - gi\|91213480\|ref\|YP_543466.1\| transcriptional repressor protein MetJ [Escherichia coli UTI89], gi\|910... gi\|226902908, gi... - gi\|237702971\|ref\|ZP_04533452.1\| transcriptional repressor protein MetJ [Escherichia sp. 3_2_53FAA], ...	240.0	[0..11]	[124..38]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFFSLKYRQ ILRLLIGNFM ADWDGKYISP YAEHGKKSEQ VKKITVSIPI KVLEILTNER  60
   61 TRRQLKNLRH ATNSELLCEA FLHAFTGQPL PTDEDLLKER HDEIPEQAKL IMRELGINPD 120
  121 EWEY

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Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	1cmaA
Description:	Met repressor, MetJ (MetR)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.04550805527064	bayes_pls_golite062009
nucleic acid binding	1.64041161776156	bayes_pls_golite062009
DNA binding	1.63454845002469	bayes_pls_golite062009
transcription factor activity	1.51901839861349	bayes_pls_golite062009
binding	0.930860104386556	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: