YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52307896, gi\|...
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52307896, gi|....

Description	E-value	Query Range	Subject Range
gi\|229350205, gi... - gi\|229512695\|ref\|ZP_04402163.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229346649, gi... - gi\|229516223\|ref\|ZP_04405671.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|227116705, gi... - gi\|227116705\|ref\|YP_002818601.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cho... gi\|229506906, gi... - gi\|229506906\|ref\|ZP_04396414.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229335216, gi... - gi\|229527208\|ref\|ZP_04416601.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229369074, gi... - gi\|229606419\|ref\|YP_002877067.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio c... gi\|121729646, gi... - gi\|121729646\|ref\|ZP_01682123.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|229341869, gi... - gi\|229520984\|ref\|ZP_04410405.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229524744, gi... - gi\|229524744\|ref\|ZP_04414149.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229509279, gi... - gi\|229509279\|ref\|ZP_04398762.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|254851431, gi... - gi\|254851431\|ref\|ZP_05240781.1\| acetyl-CoA carboxylase [Vibrio cholerae MO10], gi\|254847136\|gb\|EET25... gi\|9654707, gi\|1... - gi\|9654707\|gb\|AAF93470.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cholerae O... gi\|11354377 - pir\|\|G82341 acetyl-CoA carboxylase, biotin carboxyl carrier protein VC0296 [imported] - Vibrio chole... gi\|254286232, gi... - gi\|254286232\|ref\|ZP_04961191.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|148873102, gi... - gi\|153831417\|ref\|ZP_01984084.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|153827378, gi... - gi\|153827378\|ref\|ZP_01980045.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|227080510, gi... - gi\|227080510\|ref\|YP_002809061.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cho...	146.0	[0..12]	[176..31]
gi\|75228621 - gi\|75228621\|ref\|ZP_00715246.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli B7A]	139.0	[0..25]	[176..1]
gi\|83699281 - gi\|83699281\|dbj\|BAE54378.1\| pyruvate carboxylase biotin-containing subunit [Pelotomaculum thermoprop...	136.0	[0..13]	[176..471]
gi\|83573282, gi\|... - gi\|83590368\|ref\|YP_430377.1\| pyruvate carboxylase subunit B [Moorella thermoacetica ATCC 39073], gi\|...	135.0	[0..12]	[176..482]
gi\|77973463 - gi\|77973463\|ref\|ZP_00829011.1\| COG0511: Biotin carboxyl carrier protein [Yersinia frederiksenii ATCC...	134.0	[0..14]	[176..5]
gi\|77630572 - gi\|77630572\|ref\|ZP_00793158.1\| COG0511: Biotin carboxyl carrier protein [Yersinia pseudotuberculosis...	134.0	[0..14]	[176..5]
Q665E7\|Q665E7_YERPS - Biotin carboxyl carrier protein of acetyl-CoA carboxylase - Yersinia pseudotuberculosis gi\|51597862, gi\|... - gi\|51597862\|ref\|YP_072053.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yersini... gi\|45438486, gi\|... - gi\|45443616\|ref\|NP_995155.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yersini... gi\|77634306 - gi\|77634306\|ref\|ZP_00796409.1\| COG0511: Biotin carboxyl carrier protein [Yersinia pestis Angola] gi\|145209278, gi... - gi\|145597582\|ref\|YP_001161658.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yer...	134.0	[0..14]	[176..5]
gi\|21956882, gi\|... - gi\|22124128\|ref\|NP_667551.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yersini... gi\|108809663, gi... - gi\|108809663\|ref\|YP_653579.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yersin... gi\|108813672, gi... - gi\|108813672\|ref\|YP_649439.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yersin...	134.0	[0..14]	[176..5]
gi\|53753288, gi\|... - gi\|54293456\|ref\|YP_125871.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein [Legionella pneu...	134.0	[0..25]	[176..1]
gi\|52840708, gi\|... - gi\|52840708\|ref\|YP_094507.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein [Legionella pneu...	134.0	[0..25]	[176..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQYCKVRLL FFIFSNKTDQ NIMAMDIRKI KKLIELVEES GIMELEISEG EESVRISRGA  60
   61 AAPSAVQYTL PAAAPAPVAA PHAPVAAPVA APDAVAELS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHIIRSPMVG TFYRSPSPEA KAFVEVGQTV KMGDALCIVE AMKMMNRIEA DKAGVVTAIL  60
   61 VNDGDAVEFD EPLIVIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1a6xA
Description:	STRUCTURE OF THE APO-BIOTIN CARBOXYL CARRIER PROTEIN (APO-BCCP87) OF ESCHERICHIA COLI ACETYL-COA CARBOXYLASE, NMR, 49 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits