YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52307896, gi\|...
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52307896, gi|....

Description	E-value	Query Range	Subject Range
gi\|229350205, gi... - gi\|229512695\|ref\|ZP_04402163.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229346649, gi... - gi\|229516223\|ref\|ZP_04405671.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|227116705, gi... - gi\|227116705\|ref\|YP_002818601.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cho... gi\|229506906, gi... - gi\|229506906\|ref\|ZP_04396414.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229335216, gi... - gi\|229527208\|ref\|ZP_04416601.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229369074, gi... - gi\|229606419\|ref\|YP_002877067.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio c... gi\|121729646, gi... - gi\|121729646\|ref\|ZP_01682123.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|229341869, gi... - gi\|229520984\|ref\|ZP_04410405.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229524744, gi... - gi\|229524744\|ref\|ZP_04414149.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|229509279, gi... - gi\|229509279\|ref\|ZP_04398762.1\| biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vibrio ch... gi\|254851431, gi... - gi\|254851431\|ref\|ZP_05240781.1\| acetyl-CoA carboxylase [Vibrio cholerae MO10], gi\|254847136\|gb\|EET25... gi\|9654707, gi\|1... - gi\|9654707\|gb\|AAF93470.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cholerae O... gi\|11354377 - pir\|\|G82341 acetyl-CoA carboxylase, biotin carboxyl carrier protein VC0296 [imported] - Vibrio chole... gi\|254286232, gi... - gi\|254286232\|ref\|ZP_04961191.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|148873102, gi... - gi\|153831417\|ref\|ZP_01984084.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|153827378, gi... - gi\|153827378\|ref\|ZP_01980045.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio chol... gi\|227080510, gi... - gi\|227080510\|ref\|YP_002809061.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Vibrio cho...	146.0	[0..12]	[176..31]
gi\|75228621 - gi\|75228621\|ref\|ZP_00715246.1\| COG0511: Biotin carboxyl carrier protein [Escherichia coli B7A]	139.0	[0..25]	[176..1]
gi\|83699281 - gi\|83699281\|dbj\|BAE54378.1\| pyruvate carboxylase biotin-containing subunit [Pelotomaculum thermoprop...	136.0	[0..13]	[176..471]
gi\|83573282, gi\|... - gi\|83590368\|ref\|YP_430377.1\| pyruvate carboxylase subunit B [Moorella thermoacetica ATCC 39073], gi\|...	135.0	[0..12]	[176..482]
gi\|77973463 - gi\|77973463\|ref\|ZP_00829011.1\| COG0511: Biotin carboxyl carrier protein [Yersinia frederiksenii ATCC...	134.0	[0..14]	[176..5]
gi\|77630572 - gi\|77630572\|ref\|ZP_00793158.1\| COG0511: Biotin carboxyl carrier protein [Yersinia pseudotuberculosis...	134.0	[0..14]	[176..5]
Q665E7\|Q665E7_YERPS - Biotin carboxyl carrier protein of acetyl-CoA carboxylase - Yersinia pseudotuberculosis gi\|51597862, gi\|... - gi\|51597862\|ref\|YP_072053.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yersini... gi\|45438486, gi\|... - gi\|45443616\|ref\|NP_995155.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yersini... gi\|77634306 - gi\|77634306\|ref\|ZP_00796409.1\| COG0511: Biotin carboxyl carrier protein [Yersinia pestis Angola] gi\|145209278, gi... - gi\|145597582\|ref\|YP_001161658.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yer...	134.0	[0..14]	[176..5]
gi\|21956882, gi\|... - gi\|22124128\|ref\|NP_667551.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yersini... gi\|108809663, gi... - gi\|108809663\|ref\|YP_653579.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yersin... gi\|108813672, gi... - gi\|108813672\|ref\|YP_649439.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Yersin...	134.0	[0..14]	[176..5]
gi\|53753288, gi\|... - gi\|54293456\|ref\|YP_125871.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein [Legionella pneu...	134.0	[0..25]	[176..1]
gi\|52840708, gi\|... - gi\|52840708\|ref\|YP_094507.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein [Legionella pneu...	134.0	[0..25]	[176..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQYCKVRLL FFIFSNKTDQ NIMAMDIRKI KKLIELVEES GIMELEISEG EESVRISRGA  60
   61 AAPSAVQYTL PAAAPAPVAA PHAPVAAPVA APDAVAELS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.604	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.585	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.575	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.564	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.545	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.544	a.24.3	Cytochromes
View	Download	0.487	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.457	c.30.1	PreATP-grasp domain
View	Download	0.444	d.110.4	SNARE-like

Predicted Domain #2

Region A:
Residues: [100-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHIIRSPMVG TFYRSPSPEA KAFVEVGQTV KMGDALCIVE AMKMMNRIEA DKAGVVTAIL  60
   61 VNDGDAVEFD EPLIVIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1a6xA
Description:	STRUCTURE OF THE APO-BIOTIN CARBOXYL CARRIER PROTEIN (APO-BCCP87) OF ESCHERICHIA COLI ACETYL-COA CARBOXYLASE, NMR, 49 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits