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View Structure Prediction Details

Protein: gi|52307579, gi|...
Organism: Mannheimia succiniciproducens MBEL55E
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52307579, gi|....

Description E-value Query
Range
Subject
Range
PYRF_MANSM - Orotidine 5'-phosphate decarboxylase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=pyrF PE=3 ...
235.0 [0..12] [245..1]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAKFSKEEV NMSNKIIVAL DYETEKEALQ LVDQIDPSLC RLKVGKEMFT TLGTNFVKLL  60
   61 QDRDFDVFLD LKFHDIPNTV ARAVRSAADL GVWMVDLHAS GGLRMMEEAK KILEPYGKDA 120
  121 PILISVTVLT SMEDLDLLQI GINASPMEQV IRLAHLSQRA GLDGVVCSPQ EVEILRQHLG 180
  181 KEFKLITPGI RPVGSEFGDQ RRVMTPPAAI EAGSDYLVIG RPITQAANPA EVLRSINASI 240
  241 ANLIA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.30103
Match: 1eixA
Description: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
orotidine-5'-phosphate decarboxylase activity 2.87717797280068 bayes_pls_golite062009
catalytic activity 2.44231061702877 bayes_pls_golite062009
ribulose-phosphate 3-epimerase activity 0.982517927791965 bayes_pls_golite062009
carboxy-lyase activity 0.83446736141993 bayes_pls_golite062009
orotate phosphoribosyltransferase activity 0.108467338662618 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle