YRC Public Data Repository - Protein Structure Prediction

Protein:	RL19_MANSM
Organism:	Mannheimia succiniciproducens MBEL55E
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL19_MANSM.

Description	E-value	Query Range	Subject Range
RL19_VIBCM - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplS PE=3 SV=1 gi\|75814057, gi\|... - gi\|75814057\|ref\|ZP_00744708.1\| COG0335: Ribosomal protein L19 [Vibrio cholerae V52], gi\|121730267\|re... gi\|229355920, gi... - gi\|229507175\|ref\|ZP_04396681.1\| LSU ribosomal protein L19p [Vibrio cholerae BX 330286], gi\|229355920... gi\|229509160, gi... - gi\|229509160\|ref\|ZP_04398645.1\| LSU ribosomal protein L19p [Vibrio cholerae B33], gi\|229353732\|gb\|EE... gi\|229512833, gi... - gi\|229512833\|ref\|ZP_04402300.1\| LSU ribosomal protein L19p [Vibrio cholerae TMA 21], gi\|229350082\|gb... gi\|229519630, gi... - gi\|229519630\|ref\|ZP_04409073.1\| LSU ribosomal protein L19p [Vibrio cholerae RC9], gi\|229344319\|gb\|EE... gi\|229520860, gi... - gi\|229520860\|ref\|ZP_04410282.1\| LSU ribosomal protein L19p [Vibrio cholerae TM 11079-80], gi\|2293420... gi\|197750586, gi... - gi\|254292063\|ref\|ZP_04962839.1\| ribosomal protein L19 [Vibrio cholerae AM-19226], gi\|197750586\|ref\|Y... gi\|229338805, gi... - gi\|229525224\|ref\|ZP_04414629.1\| LSU ribosomal protein L19p [Vibrio cholerae bv. albensis VL426], gi\|... gi\|148874301, gi... - gi\|153830241\|ref\|ZP_01982908.1\| ribosomal protein L19 [Vibrio cholerae 623-39], gi\|148874301\|gb\|EDL7... gi\|229530377, gi... - gi\|229530377\|ref\|ZP_04419765.1\| LSU ribosomal protein L19p [Vibrio cholerae 12129(1)], gi\|229332150\|... gi\|229368802, gi... - gi\|229606147\|ref\|YP_002876795.1\| LSU ribosomal protein L19p [Vibrio cholerae MJ-1236], gi\|229368802\|... RL19_VIBCH - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... RL19_VIBCH - 50S ribosomal protein L19 OS=Vibrio cholerae GN=rplS PE=3 SV=3 gi\|153216310, gi... - gi\|153216310\|ref\|ZP_01950400.1\| ribosomal protein L19 [Vibrio cholerae 1587], gi\|124114352\|gb\|EAY331... gi\|124117868, gi... - gi\|153224048\|ref\|ZP_01954193.1\| ribosomal protein L19 [Vibrio cholerae MAK 757], gi\|124117868\|gb\|EAY... gi\|124120841, gi... - gi\|153803623\|ref\|ZP_01958209.1\| ribosomal protein L19 [Vibrio cholerae MZO-3], gi\|124120841\|gb\|EAY39... gi\|153820582, gi... - gi\|153820582\|ref\|ZP_01973249.1\| ribosomal protein L19 [Vibrio cholerae NCTC 8457], gi\|126508874\|gb\|E... gi\|153827343, gi... - gi\|153827343\|ref\|ZP_01980010.1\| ribosomal protein L19 [Vibrio cholerae MZO-2], gi\|149738738\|gb\|EDM53... RL19_VIBC3 - 50S ribosomal protein L19 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... gi\|75828608, gi\|... - gi\|75828608\|ref\|ZP_00757979.1\| COG0335: Ribosomal protein L19 [Vibrio cholerae MO10], gi\|254850801\|r...	180.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIIKQLEQ EQLKQNIPSF RPGDTLEVKV WVVEGAKKRL QAFEGVVIAI RNRGLHSAFT  60
   61 LRKVSNGTGV ERVFQTHSPA IDSISVKRKG AVRKAKLYYL RERSGKSARI KERLGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	1vs6P
Description:	No description for 1vs6P was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.75663213016935	bayes_pls_golite062009
structural molecule activity	9.17485893013108	bayes_pls_golite062009
RNA binding	1.4457902513736	bayes_pls_golite062009
binding	1.06497983674709	bayes_pls_golite062009
nucleic acid binding	0.694156012779703	bayes_pls_golite062009
transcription regulator activity	0.531244221462633	bayes_pls_golite062009
protein binding	0.403456843184132	bayes_pls_golite062009
translation regulator activity	0.20179424040045	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.177099375659271	bayes_pls_golite062009
DNA binding	0.119656223173058	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: