YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|215740709, gi...
Organism: Oryza sativa Japonica Group
Length: 247 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215740709, gi....

Description E-value Query
Range
Subject
Range
gi|62701821, gi|... - gi|77549501|gb|ABA92298.1| RNase3 domain containing protein, expressed [Oryza sativa (japonica culti...
280.0 [0..77] [247..1]

Back

Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTAATTMV AAVHHPRPCF RVRAAWDMNP SASPKPKAKP PPPPPPPLPT APAPTHADLF  60
   61 ARHSNSEGQV PKKTTSMGFE RWWL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPPEVKKPR SLYNAASLAY LGDCIYELYA RRHFFFPPLS INDYNKRVMD VVKCESQDLL  60
   61 LNKLLGEDFL TQEERDILRW GRNIVSSKTR TRKRAGIAVY NRASSLETLI GYLYLTNFKR 120
  121 LEQLMFQLGF TSGASSHHIA DELVSGFKKK NSTSVQSQQQ AAQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.0
Match: 1u61A
Description: X-ray crystal structure of conserved hypothetical protein from Bacillus cereus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.350623299985386 bayes_pls_golite062009
hydrolase activity 0.149411760935002 bayes_pls_golite062009
endonuclease activity 0.0885458536287509 bayes_pls_golite062009
nuclease activity 0.0537730417264266 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.0104013778512019 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle