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View Structure Prediction Details

Protein: gi|215740709, gi...
Organism: Oryza sativa Japonica Group
Length: 247 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215740709, gi....

Description E-value Query
Range
Subject
Range
gi|62701821, gi|... - gi|77549501|gb|ABA92298.1| RNase3 domain containing protein, expressed [Oryza sativa (japonica culti...
280.0 [0..77] [247..1]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTAATTMV AAVHHPRPCF RVRAAWDMNP SASPKPKAKP PPPPPPPLPT APAPTHADLF  60
   61 ARHSNSEGQV PKKTTSMGFE RWWL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPPEVKKPR SLYNAASLAY LGDCIYELYA RRHFFFPPLS INDYNKRVMD VVKCESQDLL  60
   61 LNKLLGEDFL TQEERDILRW GRNIVSSKTR TRKRAGIAVY NRASSLETLI GYLYLTNFKR 120
  121 LEQLMFQLGF TSGASSHHIA DELVSGFKKK NSTSVQSQQQ AAQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.0
Match: 1u61A
Description: X-ray crystal structure of conserved hypothetical protein from Bacillus cereus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.350623299985386 bayes_pls_golite062009
hydrolase activity 0.149411760935002 bayes_pls_golite062009
endonuclease activity 0.0885458536287509 bayes_pls_golite062009
nuclease activity 0.0537730417264266 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.0104013778512019 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle