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View Structure Prediction Details

Protein: gi|18422356, gi|...
Organism: Arabidopsis thaliana
Length: 794 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18422356, gi|....

Description E-value Query
Range
Subject
Range
SC23A_DANRE - Protein transport protein Sec23A OS=Danio rerio GN=sec23a PE=2 SV=1
996.0 [0..3] [793..8]

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Predicted Domain #1
Region A:
Residues: [1-794]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLELEAIE GLRWSWNSWP TTKSDCESLV VPLSIMYTPL MHFSELPTIP YDPLICSRCG  60
   61 AVLNPYARVD YQSRIWSCPF CFHKNLFPRS YSGITETNLP AELFPTYSAV EYSPLPSRQS 120
  121 GSNTTTPTAA ASWSNGFNQG VRSMPSNSSF SSLASSTVGG GGGVISELGP AFVFVVDASM 180
  181 VEDELRAVRS DVLFVIEQLP ENCLVALITF DSMVRVYDLG FSECSKVVVF HGERDLSPDQ 240
  241 IQQFLGLGYS KQFHHGKMSA IRKQSFLLPL VECEFNLTSA FEEIIPLVDV KPGHRPHRST 300
  301 GAAISTALGL LEGCSVTTGS RIMVFTSGPA TRGPGIIVDS DLSNSIRTHR DIITGHVSYY 360
  361 DKSCGFYKKL AKRLCDSSVV LDVFACSLDQ VGAAELRYAV EMSGGFLLLG ETFESEQFKK 420
  421 CLRHIFIRDA DGNLSMYFDV SLEVVTTKDM RICGALGPVV SLRQKNDIVS ETEIGEGGTY 480
  481 MWKTSTVTNK TCVSFFFHVS NEQNRKPQPG SAFFIQFITR YRYGNGAMRK RVTTVARRWV 540
  541 AGKSPEISSS FDQETAASVM ARLAINRAEE CHARDVITWL DNGLIRFASR FGDYIQEDPS 600
  601 SFRLTPNFSL YPQFMFYLRR SQFLDVFNNS PDETGFFRLM LNREGVVNSI IMIQPTLLRY 660
  661 SFDGPPVPVL LDIRSVTPDV ILLFDSYFYV VIHHGSKIAQ WRKLEYHKDP SHETFRNLLE 720
  721 APEIDAAQLV TDRIPMPRIV RCDQHGSQAR FLLAKLNPSV TQKTDHTGGS DIVLTDDMSL 780
  781 QDFLEDLQSL AVKG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nupA
Description: No description for 2nupA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle