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View Structure Prediction Details

Protein: gi|20466614, gi|...
Organism: Arabidopsis thaliana
Length: 776 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20466614, gi|....

Description E-value Query
Range
Subject
Range
gi|12597847 - gi|12597847|gb|AAG60157.1|AC074360_22 downy mildew resistance protein RPP5, putative [Arabidopsis th...
445.0 [0..1] [765..1]

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Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSSHNW LYDVFLSFRG EDVRVTFRSH FLKELDRKLI TAFRDNEIER SHSLWPDLEQ  60
   61 AIKESRIAVV VFSKNYASSS WCLNELLEIV NCNDKIVIPV FYHVDPSQVR HQIGDFGKIF 120
  121 ENTCKRQTDE EVKNQWKKAL TLVA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.31
Match: 1fywA
Description: Toll-like receptor 2, TLR2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.166909062418251 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [145-565]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NMLGFDSAKW NDEAKMIEEI ANDVLGKLLL TTPKDSEELV GIEDHIAEMS LLLQLESKEV  60
   61 RMVGISGSSG IGKTTIARAL FKRLSRHFQG STFIDRAFVS YSRNIYSGAN PDDPNMKLQL 120
  121 QGHFLSEILG KKDIKIDDPA ALEERLKHQK VLIIIDDLDD IMVLDTLVGQ TQWFGYGSRI 180
  181 IVVTNDKHFL IAHGIDHIYE VSFPTDVHAC QMLCQSAFKQ NYAPKGFEDL VVDVVRHAGN 240
  241 FPLGLNLLGK YLRRRDMEYW MDMLPRLENS LRIDGKIEKI LRISYDGLES EDQEIFRHIA 300
  301 CLFNHMEVTT IKSLLADSDV SFALENLADK SLIHVRQGYV VMHRSLQEMG RKIVRIQSID 360
  361 KPGEREFLVD PNDIHDILNA CTGTQKVLGI SLDIRNIREL DVHERAFKGM SNLRFLEIKN 420
  421 F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.522879
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [566-776]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLKEDGLHLP PSFDYLPRTL KLLCWSKFPM RCMPFGFRPE NLVKLEMQYS KLHKLWEGVA  60
   61 PLTCLKEMDL HGSSNLKVIP DLSEATNLEI LNLKFCESLV ELPSSIRNLN KLLNLDMLNC 120
  121 KSLKILPTGF NLKSLDRLNL YHCSKLKTFP KFSTNISVLN LNLTNIEDFP SNLHLENLVE 180
  181 FRISKEESDE KQWEEEKVSS STLNIISKLF P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 2z7xA
Description: No description for 2z7xA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle