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View Structure Prediction Details

Protein: gi|34365725, gi|...
Organism: Arabidopsis thaliana
Length: 957 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|34365725, gi|....

Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEEKIMDIG EDVKPLNSSD TKVDPAVPAS LTWQRKIDSD VKAPREFNLS VKEIFQLAPV  60
   61 GIRLWFLCRE EAAKGRLAFI DPFSKHSVTS SHGVPLGGIG AGSIGRSFKG EFQRWQLFPP 120
  121 KCEDEPVLAN QFSAFVSR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [139-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANGKKYSSVL CPRNPKLDKQ DSESGIGSWD WNLKGDKSTY HALYPRSWTM YEGEPDPELR  60
   61 IVCRQVSPFI PHNYKESSFP VSVFTFTLHN LGNTTADVTL LFTWA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [244-957]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSVGGDSEFS GGHYNSKITM NDGVQGVLLH HKTANGLPSL SYAISAQATD GVSVSACPFF  60
   61 IVSGKQDGIT AKDMWQAVKE NGSFDHLKAS EASMQSDHGS SIGAAVAASV TVLPGESRIV 120
  121 TFSLAWDCPE VQFPSGKIYS RRYTKFYGNN GDAAAQIAHD AILGHSQWES WIEDWQRPIL 180
  181 EDKRLPAWYP VTLFNELYYL NSGGTLWTDG SSPVHSLAGV REKKFSLDKS QLGLKNDIDV 240
  241 PHQNDTAVSV LEKMASTLEE LHASTTSNSA FGTKLLEEGE ENIGHFLYLE GIEYRMWNTY 300
  301 DVHFYASFAL VMLFPKLELS IQRDFAAAVM LHDPTKVKTL SEGQWVQRKV LGAVPHDLGI 360
  361 NDPWFEVNGY TLHNTDRWKD LNPKFVLQVY RDVVATGDKK FASAVWPSVY VAMAYMAQFD 420
  421 KDGDGMIENE GFPDQTYDTW SASGVSAYCG GLWVAALQAA SALARVVGDK NSQDYFWSKF 480
  481 QKAKVVYEKK LWNGSYFNYD NSGSQYSSTI QADQLAGQWY ARASGLLPIV DEDKARTALE 540
  541 KVYNYNVMKI KDGKRGAVNG MHPNGKVDTA SMQSREIWSG VTYALSATMI QEGLVEMAFQ 600
  601 TASGIYEAAW SETGLGYSFQ TPESWNTVDE YRSLTYMRPL AIWAMQWALT KTSQKQEQLG 660
  661 LEPEQQEPEL EPSSSMKHDI GFSRVSRLLS LPNEASAKST LQTLFDYTCR RMMS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.30103
Match: 1v7vA
Description: Crystal structure of Vibrio proteolyticus chitobiose phosphorylase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle