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View Structure Prediction Details

Protein: BRCA1_ARATH
Organism: Arabidopsis thaliana
Length: 941 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for BRCA1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTSHLERM GRELKCPICL SLYNSAVSLS CNHVFCNACI VKSMKMDATC PVCKIPYHRR  60
   61 EIRGAPHMDS LVSIYKNMED A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 2cklB
Description: No description for 2cklB was found.

Predicted Domain #2
Region A:
Residues: [82-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGIKLFVSQN NPSPSDKEKQ VRDASVEKAS DKNRQGSRKG RASKRNEYGK TKEIDVDAPG  60
   61 PIVMKPSSQT KKRVQLLQNL SAESLTKPTE SVETAEKPKD YTENTVIRLD EHPSLNKEGN 120
  121 LSPFFWLRDE DDGENSSQRT ESDQLLGTTP VNVPSFSDLM DSDHESPSKE DEQQKPNPGD 180
  181 MFDSEMFEWT QRPCSPEILP SPVKAKVLGR DEIDLTQKKL PKVKVA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [308-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSKCKNRKAG SARNTVARRS IGVSQEDNME SSAAATISEQ QDSRGTSGTI IRNDVNTDEN  60
   61 VKAKRATRSK AQSTRVQSDL NVSNEADGKQ GTKRKRSSIK SS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [410-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAHPIAGPNE LSLGTEIVGK GDQDQAHGPS DTHPEKRSPT EKPSLKKRGR KSNASSSLKD  60
   61 LSGKTQKKTS EKKLKLDSHM ISSKATQPHG NGILTAGLNQ GGDKQD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [516-714]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRNNRKSTVG KDDHTMQVIE KCSTINKSSS GGSAHLRRCN GSLTKKFTCA FCQCSEDTEA  60
   61 SGEMTHYYRG EPVSADFNGG SKVIHVHKNC AEWAPNVYFN DLTIVNLDVE LTRSRRISCS 120
  121 CCGLKGAALG CYNKSCKNSF HVTCAKLIPE CRWDNVKFVM LCPLDASIKL PCEEANSKDR 180
  181 KCKRTPKEPL HSQPKQVSG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [715-941]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KANIRELHIK QFHGFSKKLV LSCSGLTVEE KTVIAEFAEL SGVTISKNWD STVTHVIASI  60
   61 NENGACKRTL KFMMAILEGK WILTIDWIKA CMKNTKYVSE EPYEITMDVH GIREGPYLGR 120
  121 QRALKKKPKL FTGLKFYIMG DFELAYKGYL QDLIVAAGGT ILRRRPVSSD DNEASTIVVF 180
  181 SVEPSKKKTL TQRRSDAEAL AKSARARAAS SSWVLDSIAG CQILVLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.39794
Match: 3cojX
Description: No description for 3cojX was found.

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