YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15645639, gi\|...
Organism:	Helicobacter pylori 26695
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15645639, gi|....

Description	E-value	Query Range	Subject Range
gi\|17430370 - gi\|17430370\|emb\|CAD17135.1\| probable transcription regulator protein [Ralstonia solanacearum GMI1000... gi\|17548064 - gi\|17548064\|ref\|NP_521466.1\| transcription regulator protein [Ralstonia solanacearum GMI1000]	113.0	[0..10]	[116..16]
gi\|76578268, gi\|... - gi\|76808815\|ref\|YP_333781.1\| MerR family transcriptional regulator [Burkholderia pseudomallei 1710b]...	112.0	[0..4]	[122..99]
gi\|90569653 - gi\|90569653\|gb\|ABD94723.1\| putative regulator of mercury resistance conferring proteins [Pseudomonas...	112.0	[0..1]	[118..27]
gi\|111278973, gi... - gi\|111620576\|ref\|ZP_01407550.1\| redox-sensitive transcriptional activator SoxR [Acidovorax avenae su...	111.0	[0..4]	[122..101]
gi\|119374841, gi... - gi\|69936174\|ref\|ZP_00631034.1\| regulatory protein, MerR [Paracoccus denitrificans PD1222], gi\|691525...	111.0	[0..8]	[116..1]
gi\|116696255, gi... - gi\|116696255\|ref\|YP_841831.1\| SoxR family transcriptional regulator [Ralstonia eutropha H16], gi\|113...	111.0	[0..3]	[122..29]
gi\|83652457, gi\|... - gi\|83718632\|ref\|YP_442729.1\| MerR family transcriptional regulator [Burkholderia thailandensis E264]...	110.0	[0..1]	[122..27]
gi\|69133946, gi\|... - gi\|69298712\|ref\|ZP_00620841.1\| regulatory protein, MerR [Silicibacter sp. TM1040], gi\|69133946\|gb\|EA...	110.0	[0..2]	[116..147]
gi\|91783445, gi\|... - gi\|91783445\|ref\|YP_558651.1\| MerR family transcriptional regulator [Burkholderia xenovorans LB400], ...	110.0	[0..2]	[122..1]
gi\|85670045, gi\|... - gi\|85705620\|ref\|ZP_01036718.1\| Cu(I)-responsive transcriptional regulator [Roseovarius sp. 217], gi\|...	109.0	[0..9]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDYDEPLYL ISVVAKILGV HPQTLRQYEK EGLIEPSRTD GKMRLYSQRD MDKIKTILRL  60
   61 TRDMGVNLAG VDIILRLKEK LDELDNLNKE LQDALHKHSK NTKTPTKNLN TPTNFYELIL 120
  121 FKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.09691
Match:	1q05A
Description:	Crystal structure of the Cu(I) form of E. coli CueR, a copper efflux regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.40729334364274	bayes_pls_golite062009
DNA binding	2.05877861880033	bayes_pls_golite062009
nucleic acid binding	1.99474406643819	bayes_pls_golite062009
transcription factor activity	1.84836087644732	bayes_pls_golite062009
binding	1.32395331736751	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: